Xenopus tropicalis (tropical clawed frog): 100493327
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Entry
100493327 CDS
T01011
Symbol
trpc6
Name
(RefSeq) short transient receptor potential channel 6 isoform X1
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100493327 (trpc6)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100493327 (trpc6)
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
ING
Motif
Other DBs
NCBI-GeneID:
100493327
NCBI-ProteinID:
XP_002935616
Xenbase:
XB-GENE-1012076
UniProt:
F6V4A4
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Position
2:162501370..162589378
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AA seq
898 aa
AA seq
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MSQCEPYVSRNNNCPITAVRNESQDYLLMGTEDGAENSFHHYGYYPMQSTESRLSHRRQT
ILREKGRRQANRGPAYMFNDRSTSLSADEERFLDAAEYGNIPVVRRMMEECRSLNVNCVD
YMGQNALQLAVANEHLEITELLLKKENLARVGDALLLAISKGYVRIVEAILSHPSFSEGK
RLTTSPSQSEFQHDDFYAYDEDGTRFSQDITPIILAAHCQEYEIVHTLLRKGARIERPHD
YFCKCTECSEKQKHDSFSHSRSRINAYKGLASPAYLSLSSEDPVMTALELSNELAVLANI
EKEFKNDYKKLSMQCKDFVVGLLDLCRNTEEVEAILNGDVDTNGGNVELDGRPSLCRLKL
AIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTTAVKFLVVLAVAMGLPFLAMVYWIAP
CSKLGKIMRGPFMKFVAHAASFTIFLGLLVMNAADRFEGTKILPNESLTDNAKQLFRMKT
SCFSWMELLIISWVIGMIWSECKEIWSQGPREYMFELWNILDFGMLAIFAASFIARFMAF
WHASRAQNYVDDDESIKDLSSATLPPEIKYYTLARIKWLPSDPQIISEGLYAIAVVLSFS
RIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYLGAKQNDAF
TTVEESFKTLFWAIFGLSEVKSVVINYGHKFIENIGYVLYGVYNVTMVIVLLNMLIAMIN
NSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSFVYIALKVKGFLNKRF
PCNSKGLQEDSEMNKLGHSKHSSIRSSEDGNLNHISHPPTRYQKIMKRLIKRYVLKAQID
KESDEVNEGELKEIKQDISSLRYELLEEKSHNTEDLAELIRKLGERLSIEPEPEQNKG
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtgtgagccctatgtgtccaggaacaataactgtcccattacagcggtgcgc
aatgagagccaggactatctgcttatggggacagaggatggggcagaaaactccttccat
cactatggatactaccccatgcagagcactgaaagcagactctcccaccgtcggcaaaca
atactccgagaaaagggccggaggcaagccaaccgcggaccagcatatatgtttaatgac
cgctccacaagcctttcagcagatgaggaacgttttttagatgctgcagaatatgggaat
atccctgtagtacgtagaatgatggaggaatgccgctccttaaacgtgaactgtgtggat
tatatgggccagaatgctttgcagttggcagtagcaaatgaacacctggaaattacagaa
cttctactgaaaaaggagaatttggcccgagttggggatgctctgttgctggcaatcagt
aaagggtatgtacggatagttgaagcaatactaagccacccgtcattttctgaaggaaag
cgactcacgacgagccctagtcagtctgagttccagcatgatgacttctatgcctacgac
gaggatggaacaaggttctcacaggatattacccctatcattctggctgcccattgtcag
gaatatgaaatagtccatacgcttctgcgaaagggggcccggattgaaaggccccacgat
tatttctgcaaatgtactgaatgtagcgaaaagcaaaaacacgactctttcagtcactca
aggtctagaatcaatgcctacaaagggctcgctagtcctgcatacctttccctttccagc
gaagatccggtcatgacagctctggaacttagtaatgagctggctgttctagcaaatatt
gaaaaagaatttaagaatgactacaaaaaattgtctatgcaatgcaaggactttgttgtt
gggcttctcgatttgtgcagaaatacggaggaagtggaagccattttgaatggtgatgta
gatacaaatggcggtaacgtggaattggatggccggcccagcttgtgtcgcttaaaactt
gctattaagtatgaagtcaagaagtttgttgcacatcccaactgccagcagcagctcctc
tcaatctggtatgagaatctgtcgggcctacgccagcagactactgctgtcaaattcctg
gttgttttagctgtcgcgatgggattgccttttctggcaatggtgtactggattgcacca
tgtagtaagcttggtaagataatgcgtggccctttcatgaagtttgtggcccacgcggct
tctttcaccatcttcctggggctgctagtgatgaatgccgctgacaggtttgaaggcaca
aagatccttcctaatgaaagcctcacggataatgccaagcagctctttaggatgaaaacc
tcttgcttctcctggatggaattgctcattatctcctgggtaataggcatgatatggtcc
gaatgtaaagagatctggtcgcaggggcccagggaatatatgtttgagctgtggaatatt
ctcgacttcggaatgttagccatcttcgcggcgtcgtttattgcaaggtttatggctttt
tggcacgcgtcccgggcgcagaactatgttgacgacgatgagagcatcaaggatctgtcg
agcgcaacgctgcctcccgaaataaaatactacacgctagccagaatcaaatggctgccg
tcagatcctcagatcatatccgaaggtctctatgcaattgccgtcgttttaagtttctcc
agaattgcctatattttgcccgctaatgagagcttcgggcccctgcagatatcactgggt
cgaactgtcaaagatatattcaagtttatggtgatatttatcatggtgtttgtagccttt
atgattgggatgtttaacctctactcctattatcttggagccaaacaaaatgatgccttt
acaaccgttgaagaaagttttaagacattgttctgggctatttttggactttctgaagtg
aaatcagtggtcatcaattacggacacaaatttattgagaatattggctacgtcctgtac
ggggtatacaatgtcaccatggtcatcgttctgctcaacatgctcattgccatgatcaac
aattcattccaggaaattgaggacgatgcagacgtggagtggaagtttgctagagccaaa
ctctggttctcgtactttgaagaagggaggacactcccagtaccattcaatttggttcca
agccccaaatcatttgtttacattgcactgaaagtaaaaggttttctcaacaaaaggttc
ccgtgcaacagtaaaggcttgcaggaagactcagaaatgaacaagctgggtcacagcaaa
cattccagcatcaggagctcggaagacggcaatctgaatcacatcagccatccgcccacc
agatatcaaaaaattatgaagcgccttattaagagatatgtcctgaaagctcagattgac
aaggagagcgacgaagtgaacgaaggggagttaaaggagatcaagcaggacatttccagc
ctgcgctacgagcttctggaggaaaagtcccacaatacagaagacttggcagagcttatt
aggaaacttggggagagactgtcaatagagcctgaaccagaacagaacaagggatga
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