Xenopus tropicalis (tropical clawed frog): 100496099
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Entry
100496099 CDS
T01011
Symbol
pkp1
Name
(RefSeq) plakophilin-1
KO
K10387
plakophilin 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xtr04812
]
100496099 (pkp1)
Cytoskeleton proteins [BR:
xtr04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
100496099 (pkp1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT
HEAT_EZ
ARMC9_ARM
Atx10homo_assoc
DUF2615
Motif
Other DBs
NCBI-GeneID:
100496099
NCBI-ProteinID:
XP_012809816
Xenbase:
XB-GENE-949309
UniProt:
A0A8J0SDD9
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Position
2:complement(63773936..63801325)
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AA seq
753 aa
AA seq
DB search
MLASPSPLKTALASEVFLWPNESSLAVPSDKCLRGGVSGDQRVKEQVMMTVKRHKSRSST
SSPGYKSSMYETVADYNNMNYNNNANQYSKYQSANSIGYQYNGTLKRDQQRFSSYSQADN
WGQHRHMSYASPLSPGSDFDYKQTLKSSRSEPDLTGPDVRATLRRQNQYNQMQNQHHQQQ
RPGRAHNSSFYSYHSTQQKKRGPMTPARTPSSLSTVQQQQQQQQQQHCYYTNAQRNESNF
QNFNIPKQDNYGTINVPSRMDTRDEFDAGGMTLDRAVELLGYPDDKFQMSGANYIQHACF
QDENAKNLVYQSNGISKLINLLQSPNENVQQATAGALRNLVFKNSANKLETSQKGGTREA
VSLLKRTSHPDIQKQLTGLLWNLSSSDQLKDELVKEALPVLNERVVIPYSGWSERSMSNQ
NCMLDPEVFFNATGCLRNLSSADVGRKAMRNCPGLVDSLMFYIQKCLANKCPDDKSVENC
ACILHNLSYHLDSEVPNKYSQLDEQMYRLQQNDKTTTGCFSNKSEKLQNNNFQLPLPEED
ANPKGAALLSHSSAIRTYLSLLEQSKKDSTLEACAGALQNLTASKGQMSNGMSQIIGLKD
KGIPQITRLLQSGNADVVKAGSSLLSNMSRHPSLHKTMATQALPDVSRILSQSSGKTMNS
EDILSSACYTMRNLAMAEPQIAKQNISGNLLGNLVNMCKSGASPKVGEAARVFLTDMWAQ
RELQGFLKQQGLDKSIMGSLASTALRNTIPRVF
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgctggcttcaccgtcaccattgaaaactgctctcgcatcagaagtctttctgtggcca
aatgagtcctcgctggctgttccttcagacaaatgtctgcgtggtggtgtgtctggggat
cagcgcgtcaaggaacaagtcatgatgactgttaaaaggcataagtcgaggagttcaact
tcaagtccaggttacaaaagttcaatgtatgaaacagtggcagattataacaacatgaac
tacaacaataatgctaatcaatattccaaatatcagagtgctaactcaataggatatcag
tacaatggaactctgaaaagagaccagcaacggtttagttcttatagtcaagcagacaat
tggggtcagcaccgccacatgtcttatgcgtcacctcttagtccaggcagtgattttgac
tacaagcaaacccttaaaagtagccgaagcgagccagacctgacaggacctgatgtaagg
gctacactaagacgccagaatcagtataatcaaatgcagaaccaacaccaccagcaacaa
cgtcctggaagagctcacaattccagcttttacagttaccacagcactcagcagaagaag
cgagggcccatgacaccagcacgaactccatcttcactttcaactgtgcaacagcagcag
cagcagcaacagcagcagcactgttattacacaaatgcacaaagaaatgagtcaaacttc
caaaacttcaatattccaaaacaagacaattacgggaccataaatgtaccatccaggatg
gatacaagagatgaatttgatgcagggggtatgaccttagatcgagcagtggaactacta
ggataccctgatgacaaatttcagatgtcaggagctaattacatacaacatgcatgtttt
caggatgagaatgccaagaatctggtttaccagagcaatggaatatctaagctaattaac
cttctccaaagccccaatgaaaatgtgcagcaagcaacagcaggagctctaagaaatcta
gttttcaaaaattctgcaaataaacttgaaacaagtcagaagggaggcacaagagaggct
gtctcactcctaaagaggacctctcacccagatattcaaaagcaacttacaggcttgctg
tggaatttgtcttcttcggatcagcttaaagatgaactggttaaagaagctcttcctgtt
cttaatgaacgtgtggtgattccatattctggatggtctgaacgttccatgtctaatcag
aattgtatgctagatcccgaagtcttttttaatgccactggctgtttaaggaacctaagc
tctgccgatgttggtcgcaaagctatgcgcaactgcccaggtcttgtggactctttgatg
ttttacattcaaaaatgtttggctaataaatgccctgatgacaagtcagtagagaattgt
gcttgtatcctacacaatctgtcttaccacttggactctgaagtaccaaataaatactct
cagctggatgagcaaatgtatcgtctccagcaaaatgataagaccactactggctgcttc
agcaacaagagtgaaaagctgcagaataataactttcagctgcctctaccagaagaagat
gctaaccctaagggtgccgcacttctgtctcactccagtgctattcgtacatacctttct
ctactggaacagagtaagaaggactcaacacttgaagcttgtgctggagcactccaaaat
cttacagccagcaaagggcagatgtccaatgggatgagtcaaatcattgggttaaaagac
aagggtattccccaaattactcgccttttgcagtcaggaaatgctgatgttgtgaaggca
ggaagctctttactcagcaacatgtcccgtcatccatctcttcacaaaaccatggctacc
caggctcttcctgatgtttcacgaatcctctctcagtcttctggaaaaacaatgaactct
gaagatattctgtcctctgcttgttacacaatgagaaaccttgccatggcagaaccacag
atagccaaacaaaatatttcaggcaacctcctgggaaacttagtcaacatgtgtaaaagt
ggagcctctcctaaggttggagaagcagctcgtgtcttcttgacagacatgtgggctcag
agggaactgcagggatttcttaaacagcaaggtcttgacaagagtataatgggatcccta
gcaagcactgccctcaggaatactataccacgggtcttttaa
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