Xenopus tropicalis (tropical clawed frog): 448624
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Entry
448624 CDS
T01011
Symbol
kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
448624 (kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
448624 (kdm2b)
04121 Ubiquitin system [BR:
xtr04121
]
448624 (kdm2b)
03036 Chromosome and associated proteins [BR:
xtr03036
]
448624 (kdm2b)
Enzymes [BR:
xtr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
448624 (kdm2b)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
448624 (kdm2b)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
448624 (kdm2b)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
448624 (kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
448624 (kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_At1g61320_AtMIF1
LRR_4
Cupin_1
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
448624
NCBI-ProteinID:
XP_031748490
Xenbase:
XB-GENE-990506
UniProt:
A0A6I8QMJ1
LinkDB
All DBs
Position
1:162286821..162363483
Genome browser
AA seq
1258 aa
AA seq
DB search
MEAKKDSARRLRSIDRTRYAEHEDLSDVEDMVSIRGFSLEQKISSNSYRGDFVRYMEGKE
FTYEYVQREALRVPLLFSTKEGLGIKMPGQDFTVRDVKLLVGSRRVVDVMDVNTQKSIDM
SLSQFVRYYETPETEREKLYNVISLEFSHTKLEKVVKRPTVVDAVDWVDNMWPRHLKELQ
KESTNVIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKVFWLIPPTGHNL
QLYEEWLLSGKQTDIFLGDRSEGCQRIELKQGQTFFIPSGWIHAVYTPADSLVFGGNILH
SFNIPMQLRVYEIEDRTRVHAKFRYPFYYEMCWYVLERYVCSLTRRSHLIKEYQRESMIT
DRKSSLDSLSSDSWLEMEEEFCDVHIKEEKDDLGEKPSKQSGDESSTTNSTNSNGKDAVE
KKQKPTLMQYLKRTLSNDSDESSKSIVHSDFPKTPTGSPATDMPCKWTHLTEFELKGLKA
LVEKLESLPENKKCVPEGIEDPQALLEDVKTVLKEHADDDNSLAISGVPVVTWPKKTSKN
RAVGRPKGKIATSPAVKLSANRTSAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGP
GRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDCVDGQEAKFNVMLMECSICNEIIHPGC
LKTKESDGVVNDELPNCWECPKCNHAGKTGKVYKQKRGPGFKYASNLPGSLLKEQKVNRD
NKELTEIVKKKVEREETPKQIPDEQPKKKPVEGVIKKKPEDGHIRKKRKFEKPPDPSVRK
RLKLVKEEKLLRKKRRSWKTPDERAMIAKTLRRIKQEPDDDLTEAPPKSKESDQSRSSSP
TAGPSTEGPELKEKKKIRRKLRVSNKELSKELSKELNQEIQKTESSLANENHHPIKSEPE
SDNEEPKKCISSNGERMHHFSKELNGTPKELRHQLFPSLKTTPRVSRPPPSLSPPKCMQM
ERHVIRPPPISPPPDSLPLANGATHVMQREVWMAIFSYLSHRDLCICMRVCRTWNRWCCD
KRLWTQIDLNRCKSITPLMLSGIIRRQPASLDLSWTNISKKQLSWLINRLPALRDLNLSG
CSWIAVSALCSSSCPLLRTLNVQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNITEL
RLAGLDITDASLRLMIRHMPLLAKLDLSYCNHVTDQSINLLTAVGTSTRDTLLEMNLSDC
NNVTDQCLTFFKRCGNICSIDLRFCKQVTKESCEQFIAEMSVIVQFGQTEEKLLQKVS
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaaagaaagactctgcaagaagattgcgctctattgaccgcaccaggtacgca
gagcacgaagacctgtcagacgtggaggacatggtgagcatcaggggcttcagcctggag
cagaagatcagcagcaactcctaccgaggggacttcgtacgctacatggaaggcaaagaa
tttacctatgaatatgttcagagagaagcccttcgagtacctttacttttctccaccaaa
gaaggactgggtattaaaatgccaggacaagatttcactgttcgggatgtgaagctctta
gttggaagccgccgggtagttgatgtgatggatgtgaacactcagaagagcatagacatg
agcttgtcacagtttgttcgatactatgaaacaccagaaacggaaagggaaaaactgtac
aatgtgatcagtctggagtttagtcatacaaagctagagaaagtggtaaagcggcctacc
gtggttgatgcagttgactgggtggataacatgtggccgcggcatttaaaggagctacaa
aaggaatcaacaaatgtaatagctgaaatgaagtatcctaaagtgaaaaagtattgtttg
atgagtgtaaagggctgcttcacagattttcatattgattttggcgggacatctgtttgg
taccatgtattccgtggtgggaaagtattttggttgattcctccaactgggcacaattta
cagttatatgaggaatggcttttatcagggaaacaaactgacatatttttgggagaccga
tcagaagggtgtcaaaggattgagctcaagcaagggcaaacattcttcattccatcagga
tggatacatgccgtgtatacaccagcagattccctagtgtttggtgggaacattcttcac
agcttcaatattcctatgcagcttcgtgtttatgaaattgaagacagaacaagggtacat
gccaagttccgctatcctttttattatgagatgtgttggtatgtcctagagaggtatgtc
tgttctttgaccagacggtcccacctaatcaaggaataccagagagagtcaatgataaca
gacaggaagtctagtttggacagtctctcctcagattcttggttagaaatggaggaagaa
ttctgtgatgtacatataaaggaggaaaaagatgaccttggggaaaaaccttccaaacaa
tcaggagatgagtcttctacaaccaacagcacaaattctaatggtaaggatgcagttgag
aaaaaacaaaagcctaccttgatgcagtacctaaaaaggactttgtccaatgactcagat
gaaagtagcaagtccattgtccacagtgatttccccaaaactccaacaggatctcctgct
actgacatgccctgcaaatggactcatctcactgaatttgaactgaagggtttgaaagcc
ttagtggagaaacttgagtccctccctgaaaataagaaatgtgtccctgagggaattgag
gatccacaagcactacttgaggacgtgaagacagtactaaaagaacatgcagatgatgac
aacagtctggccatttctggtgtaccagtggtgacgtggcccaagaaaaccagcaagaac
cgggcagttggaaggcccaaagggaaaattgccacttcacctgcagtgaaactttctgct
aacagaaccagcgcaggggcacgtcgcaggaggactcgatgccgtaaatgtgaagcatgc
ttacgcacagaatgtggcgagtgtcacttttgcaaggacatgaagaaatttgggggtcca
ggaagaatgaagcagtcatgtattatgcgtcaatgcattgcacctgtccttcctcatact
gctgtttgcctggtgtgtggagaagcagggaaggaagactgtgtagatggacaagaagct
aagtttaatgtcatgctgatggaatgctccatctgtaatgaaattatccatccgggatgc
cttaagacaaaagagtcggacggtgtagtaaatgatgaacttccaaactgctgggagtgc
ccaaaatgcaatcatgctggaaaaactgggaaagtctacaagcaaaaaagaggcccagga
ttcaaatatgcttccaatctgcctgggtcacttcttaaggagcagaaggtgaatcgagac
aataaggagctaactgagattgtgaaaaagaaggtggagcgagaggagacccccaagcag
atcccagatgagcagcccaaaaagaagcctgttgagggagtcattaaaaagaagccagag
gatggacatattagaaagaagcgaaaatttgagaagcctccagatccctcagtgaggaaa
cggttaaagcttgtaaaagaagagaagcttttaagaaaaaagaggagatcatggaaaaca
ccagatgaaagagcaatgatagctaaaacacttcggcgtataaaacaagagccagatgat
gatttgactgaagctccgccaaaatccaaggaaagtgaccagtcaaggtctagctctcct
actgcaggtcctagcacagaggggccagagctcaaggagaagaagaagattaggagaaag
ctaagagtttcgaataaggaactaagcaaagaattaagcaaagagttaaaccaggagata
caaaaaactgaaagtagcttggccaatgagaaccaccatcctattaaatctgagccagaa
agcgacaatgaagagccaaaaaaatgcatatctagcaatggggaaaggatgcatcatttt
agcaaagaattaaatggtactccaaaggaactgaggcaccagctttttcccagtctaaaa
acgaccccaagggtctcccgcccaccaccttccttgtcacctcctaagtgcatgcaaatg
gagcggcacgtaataaggccacccccaataagccctcccccagactccctgcctctagca
aatggagcaacccatgtgatgcagagagaggtctggatggccatttttagctacctcagc
cacagggacttgtgcatttgtatgagagtctgcagaacatggaacagatggtgttgtgat
aagaggttatggacacaaattgacttaaaccgctgtaaatcaatcaccccgcttatgcta
agtggcattattaggagacagccagcttcacttgaccttagctggacaaacatatccaaa
aaacaactcagttggcttataaaccggcttccagctttaagggaccttaacttgtctggt
tgctcttggattgcagtttcagctctttgtagttccagctgccccttacttaggacactc
aatgttcagtgggtagaagggctaaaggatgcgcaaatgagagatcttctgtctcctcca
acagataatagaccaggtcagattgataaccgcagtaagctgagaaatatcacagagctc
cgcctggcaggcttggatatcacagatgcctcgcttcgccttatgattcggcatatgcct
ctccttgccaaattagacctgagctactgtaaccatgtcacggatcaatcaatcaacctg
ctcacagcagtggggacctccaccagggataccttattagagatgaacttgtcagactgc
aataatgttacagatcagtgcctgacttttttcaaacgctgtgggaatatctgctcgatt
gacctacgattctgtaagcaggttacgaaggaaagctgtgagcagttcatagcagaaatg
tctgtgattgtacagtttggccaaaccgaagaaaagcttcttcagaaggtcagctaa
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