Xenopus tropicalis (tropical clawed frog): 493524
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Entry
493524 CDS
T01011
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
xtr04120
Ubiquitin mediated proteolysis
xtr04140
Autophagy - animal
xtr04144
Endocytosis
xtr04620
Toll-like receptor signaling pathway
xtr04621
NOD-like receptor signaling pathway
xtr04622
RIG-I-like receptor signaling pathway
xtr05132
Salmonella infection
xtr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
493524 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
493524 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
493524 (traf6)
04140 Autophagy - animal
493524 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
493524 (traf6)
04621 NOD-like receptor signaling pathway
493524 (traf6)
04622 RIG-I-like receptor signaling pathway
493524 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
493524 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
493524 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
493524 (traf6)
04121 Ubiquitin system [BR:
xtr04121
]
493524 (traf6)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
493524 (traf6)
Membrane trafficking [BR:
xtr04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
493524 (traf6)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
493524 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
TRAF6_Z2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
RING_XB3-XBAT31
Sina_ZnF
U-box
SlyX
TRAF3_RING
Med21
zf-RING_11
Prok-RING_4
Spc29
DUF16
TFIIF_alpha
DUF7310
Cortex-I_coil
CENP-F_leu_zip
BAR_3
Motif
Other DBs
NCBI-GeneID:
493524
NCBI-ProteinID:
NP_001008162
Xenbase:
XB-GENE-480628
UniProt:
Q28DL4
LinkDB
All DBs
Position
4:10699315..10720468
Genome browser
AA seq
558 aa
AA seq
DB search
MSILNCRPSFDGVDTDDACCGAMASACCVNTKEDGESPSAGSPSGTPQSLVLEDVQGYDV
EFDPPLESKYECPICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPVDNESLMENQLF
PDNFAKREILSLRVKCPSQGCTETMELRHLERHLVRCDFAGVECSQCQSSFPKYSLQKHK
FEECPRRQIFCENCAVAMALEDKLNHDQTCPLAYVTCEYCQTNLIREQMPAHYSMDCTMA
PIPCMYYEFGCTEKMQRNDLARHLQEFTQAHMRMMAQTLRSFSSSVTPTSHMPDISFCDP
SQFEPAPPSVATVHSTHTPSQNDCTQETRNLRETIEQLEGRLVRQDHQIRELIAKMETQC
TYVNELKHTIRSLDNRLGEMESQQCSGIFIWRINNFNSLLKNQEEERPVVIHSQGFYTGK
PGYKLCLRLHLQLPSAQRCANYISLFVHTMQGEYDSLLPWPLQGTIRLSILDQSEGVAMQ
DQEEVMDTKPELLAFQRPTVARNPKGFGYVTFMHLQALKQRQYVKNDTLLVRCSVTTHLD
LISPRREGFQPRSGDGAL
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcctgaactgtaggcccagtttcgacggggtagatacggacgacgcctgctgt
ggggctatggccagcgcttgctgcgtgaacaccaaggaagatggtgagagtccctcagcc
ggatcccccagcgggaccccacaaagcctggttttggaggacgttcagggctacgacgtg
gagtttgatcctcccttagaaagcaagtacgagtgccccatctgcctcatggctctgcgg
gaagctgtacagacaccctgcggccataggttttgtaaggcctgtatcctcaaatctatc
agggacgcaggtcacaagtgcccagtggataatgagagtctcatggagaaccagctgttc
ccggacaattttgccaaaagggaaattctttctttaagggtgaagtgccccagccagggc
tgcacagagaccatggagctcaggcatctagagcgtcacttggtgcggtgcgattttgcc
ggcgtcgaatgctcccagtgccagagctccttcccgaagtattccttgcagaagcacaag
ttcgaggaatgtcccaggcgccagatattctgcgaaaattgtgctgtggcaatggcgctt
gaagacaagttgaatcacgatcaaacctgccctttggcctacgtgacatgtgaatactgt
cagaccaatctcatccgcgagcagatgccagctcactacagtatggattgcaccatggct
cccatcccctgcatgtactatgagtttggatgtacagaaaagatgcagaggaatgatctg
gcccggcacctacaggagttcacccaggcacacatgcgcatgatggcccagaccctgcgc
agcttcagcagctccgtaactccaaccagccacatgcccgatatctcattctgtgacccc
agccagtttgagcctgcccccccatccgtggccactgtccactccacccatacgccgtcc
cagaatgactgtacacaggagaccaggaacctccgggagaccattgagcagctggaaggc
cgccttgtgaggcaggaccaccagatccgcgagctcatagccaagatggagactcagtgc
acctacgtgaatgaactcaaacacaccatccgttctctggacaacagactgggcgagatg
gagtcgcagcagtgcagtgggatctttatatggaggatcaacaatttcaattcactcctg
aagaaccaagaagaggagcggccggtggttattcacagccaagggttctacaccgggaag
cctggatataagctttgcctaaggctgcacctccagcttcccagcgcccagcgatgcgcc
aactacatctccttgtttgtccacacaatgcagggcgagtacgatagcctcctaccttgg
ccgctccagggaaccatccgtctgtctatcctagaccaatcagaaggagtcgctatgcag
gaccaagaggaagtgatggacaccaagccagaattgctggccttccagaggccaacggtg
gcgagaaaccccaagggcttcggctacgtcaccttcatgcacctacaggcgttaaagcag
cggcaatacgtgaaaaacgacaccctcctcgtgcgctgctcagtgactactcacctggat
ctgatcagcccccgccgggagggcttccagccacgcagcggagacggggccctatag
DBGET
integrated database retrieval system
