Xenopus tropicalis (tropical clawed frog): 496596
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Entry
496596 CDS
T01011
Symbol
kdm2a
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
496596 (kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
496596 (kdm2a)
04121 Ubiquitin system [BR:
xtr04121
]
496596 (kdm2a)
03036 Chromosome and associated proteins [BR:
xtr03036
]
496596 (kdm2a)
Enzymes [BR:
xtr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
496596 (kdm2a)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
496596 (kdm2a)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
496596 (kdm2a)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
496596 (kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
496596 (kdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
Cupin_8
F-box
PHD
SR-25
LRR_At5g56370
Myc_N
C1_1
Cupin_1
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
496596
NCBI-ProteinID:
NP_001011176
Xenbase:
XB-GENE-5900838
UniProt:
Q5U263
LinkDB
All DBs
Position
7:57835290..57980336
Genome browser
AA seq
1146 aa
AA seq
DB search
MEEEQLRYSRRLRHTLRRRYEDDGISDDEIEGKRTFDLEEKLRSSKYNSNFITYMEGKDF
NMKFIQEGGLRDPIIFTKSEGLGIKMPDPNFSVNDVKMFVGSRRVVDVMDVGTQKGIEMT
MAQWAKYYETPEEEREKLYNVISLEFSHTKLENLVQRPTTVDQIDWVDNIWPRHLKDRQT
ESTNVIQEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHILRGGKVFWLIPPTDQNLE
LYENWLLSGKQGDVFLGDRVTECQRIELKQGYTFVIPSGWIHAVYTPQDTLVFGGNFLHS
FNIPMQLRIYSIEDRTRVPTKFRYPFYYEMCWYVLERYVYCMMRRSHLTKEFQRESLSID
LELNGRQRPDTPSSSSSSSSSGLSSSSDNDDSSDQDWEEEEGLRKRERDRCRVERELQRK
RNRDRQQRDQERDRHGRTERIIIHTLPASLRPLTPPPSLPLPTPDSPPSTSPFLTWFEVE
GLRCLVLKLESLPPLKKCLPDGIHDPEALIFDIKRLLEDHAHDPPELALTGVPIIQWPKR
SQYKVHLRPKIQFTKPHTMRPASRHSTAPPRTSGTPSGTTASSGARRRRVRCRKCQACVQ
RECGTCHYCKDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCALCGEVDQTNDTQDFERKL
MECSVCNEIVHPGCLEMDGEGLLSDELPNYWECPKCYEGQKHTVEANHDRILLHSKRKAA
DNYESSHYYPAKVLRPPLGQSPPSPPLLLLPPSPSSAPPTPPSAQTQVPLASREERAKRR
QLAREKENHPTGCDQSEGDRLRLRGPYLTVTLQRPPKELSSTSIVPKLQAITPNPRQPIR
AAPLHQDEEREEEEEEEEEEEETENVMLGQRKDSTSMQKDVWLSVFHYLTHEELCICMRV
CKAWYKWGCDKRLWSRIDVSRCKSLVPQALSGIIKRQPIYLDLSWTNVSKKQLIWLINRL
PGLKDLILAGCTWSAVSALASCSCPLLRTLDLRWTVGIKDTQIRDLLTPASDKSGHDSRS
KLRLLTDLRLSGLDISDVTLRLIIRHCPLLSKLDLSHCPLLSDQSVNLLTAVGSSTRGTL
THIHLAGCKGVTDESLLYLRRATNLSLIDLHGCKQVTRGACEEFISDLSVSTLYCLSDDK
LIQRIS
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagcaactccgatacagccgcagattgaggcatacactgcgtcgccgttat
gaagatgatggaatatcagatgatgagattgaaggaaaaagaacttttgatttggaggaa
aaattgagaagcagcaagtacaactccaactttatcacctatatggagggcaaagatttt
aacatgaaatttattcaagaaggaggactcagggacccaatcatttttacaaaatctgaa
ggacttggcatcaaaatgcctgatcctaactttagtgtgaatgatgtcaagatgtttgtt
gggagtaggcgtgttgtagatgttatggacgtcgggactcagaagggcatagaaatgaca
atggcacaatgggcaaaatactacgagacacctgaagaagagagagaaaaactatataat
gtgatcagcctggagtttagccacactaagctggagaatctggtacagaggccgaccacg
gtggatcagattgattgggttgacaatatctggccaaggcatctaaaggacaggcagact
gaatccacaaatgtaattcaagagatgcaatatcccaaagtacaaaagtactgcctcatg
agtgttcgtggttgttatacagattttcatgtggactttggtggcacatccgtgtggtac
cacatactcagaggaggcaaggttttttggctaatacctcctacagatcaaaatctggaa
ctatatgagaattggctgctgtcgggaaaacaaggtgacgtctttcttggggatagggtc
accgagtgtcagcgcattgaactaaaacaaggctacacatttgttattccctcaggatgg
attcatgctgtgtacacacctcaggacacactggtgtttggtgggaatttcctgcacagc
ttcaacataccaatgcaacttcgtatatacagcatcgaggacaggacaagggtacctaca
aagttccgatatccattttattatgaaatgtgttggtatgtgcttgaacgatatgtctac
tgcatgatgcgacgctctcatctcacaaaggagttccaaagggagtctctgagcattgat
ttagagcttaacggacgccagagacctgacactccatcctcatcatcttcatcatcctca
tctggattatcgtcttcctctgataatgatgattcctctgatcaagattgggaggaagag
gaaggtctgagaaagagggaaagagatagatgcagagtggagcgagaacttcagaggaaa
aggaacagggataggcaacaaagagaccaagaaagagatcgacatgggcgtactgagagg
ataattatccatactctacctgcttccctacgtcctttaactccaccaccttctcttccg
ctgccaacaccagattcacctcccagcacctctcccttcctgacatggtttgaagttgaa
ggattacgctgtcttgtgctgaaacttgaatccctgccaccacttaaaaagtgcctacca
gatggtatccatgacccagaagctcttatctttgatatcaagagacttcttgaggaccac
gctcatgatccacctgagcttgcgctcactggcgttccaataattcagtggcccaagaga
agtcagtataaggttcaccttcggcccaagattcagtttacaaaacctcacaccatgcgt
ccagcttcccgtcactccacagctcctcctcggacgtcaggcactccatctggtactaca
gcttcttctggagctcgaaggcgccgtgtcaggtgtcgcaagtgtcaagcttgtgtccag
cgagagtgtgggacttgccactactgtaaagatatgaagaagtttggagggccaggccgt
atgaaacagtcttgtgtactgaggcagtgccttgcgcccagactgccccattcggtgacc
tgtgccttgtgtggtgaagtggatcaaacaaatgacacacaggattttgaaagaaagctg
atggagtgttcagtttgcaatgagattgttcacccaggatgtctagagatggatggtgaa
ggactgctaagtgatgaacttccgaactactgggagtgtcccaaatgttatgagggacag
aagcacacggtggaggcaaatcacgaccgcatcttactgcacagtaaacgtaaagctgct
gacaactacgagagcagtcattactatcctgccaaagttcttcggcctccactgggtcag
agccccccatccccacctcttcttttgctcccaccctccccttcatctgctccacccaca
ccaccctctgcccaaacacaagtcccacttgcaagccgagaagagcgagccaagaggcgc
cagcttgctagagagaaagagaaccacccaactggatgtgatcagtctgagggagatcgt
ttgaggcttagggggccctatctcactgtcactcttcagcgtccaccaaaagaattaagc
tccacttccattgttcccaagttacaagccatcacacctaatcctcgacagcctatacgc
gcagcaccactacatcaggatgaggaacgagaagaagaagaggaggaggaggaagaagaa
gaagaaacagagaatgtcatgctaggtcaaagaaaagacagcacatcaatgcagaaagat
gtttggctttctgttttccattacctcacacatgaagagctttgcatctgtatgagagtc
tgcaaagcttggtacaaatggggctgtgacaaacgtctctggtcgaggattgatgttagt
cgttgtaagtctctagtaccacaggctctcagtggcattataaagcgacagcctatatac
cttgacttgagctggacaaatgtgtcaaagaagcaacttatatggcttatcaaccgcttg
ccaggtctgaaggacttaatccttgctggttgcacttggtctgctgtctctgcccttgct
agctgtagttgtccccttctgcgtactctggacctgcgctggacagttggaatcaaagat
actcagattagagatttgcttacaccagcctcggacaaatcaggacatgattctcgcagc
aagctacgcctgctaacagatctgcgcctgtctggccttgatatttctgatgttactttg
aggttaatcatacgccattgcccacttctgtctaagcttgaccttagccactgtccactg
ctttctgatcagtctgtaaacctccttacagctgtaggctcttctacaaggggaactctc
actcacatacacttagcaggttgtaaaggggtaacagacgagtctcttctatatctgcga
cgcgccactaatctgtcccttattgacttgcatggttgcaagcaggttactcggggagct
tgtgaggaatttatttcagacctctctgtgagcaccttgtattgtttatcagatgataaa
ctcatccagaggatcagctag
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