Xenopus tropicalis (tropical clawed frog): 594937
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Entry
594937 CDS
T01011
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
594937 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
594937 (eftud2)
Spliceosome [BR:
xtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
594937 (eftud2)
Complex C
U5 SnRNP specific factors
594937 (eftud2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
594937
NCBI-ProteinID:
NP_001025537
Xenbase:
XB-GENE-972643
UniProt:
Q5BL79
LinkDB
All DBs
Position
10:17863738..17887964
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AA seq
974 aa
AA seq
DB search
MDADLYDEFGNYIGPELDSDDDNDDDDMGRDDRDVDVAEDEDDDEYTGDPDDDRGGMEVV
LHEDKKYYPTAEEIYGPEVETIVQEEDTQPLTEPIIKPVKAKKFSMMEQGLPATVYEMDF
LADLMDNPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRHDQDLCYTDILFTEQERG
VGMKSTPVTIVVPDTKEKSYLFNIMDTPGHVNFSDEVTAGFRISDGVVLFIDAAEGVMLN
TERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLLSMYSTDENL
ILSPLLGNVCFASSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTK
KAPTSSSQRSFVEFVLEPLYKILAQVVGDVDTTLPQTLEELGIHLTKEELKLNIRPLLRL
VCNRFFGEFTGFVDMCVQHIPSPKAGARAKIEHTYAGGIDCELGEAMSECDPDGPLMCHT
TKMYSTDDGVQFHAFGRLLSGTIHAGQPVKVLGENYTLEDEEDSQVCTVGRLWVSVARYH
IEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPS
ELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADP
VVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQISWNRKKLGEFF
QTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLSSVKDSIVQGFQWGTREGP
LCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQA
PADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSL
SVFHHWQIVPGDPLDKSIIIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPML
LELAKQDVVLNYPM
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgacttgtacgatgaatttggtaactacattgggcctgaattggattcagat
gatgataatgatgacgatgacatggggagagatgacagggatgtggatgtggcagaagat
gaggatgatgatgagtatacgggggatcctgatgatgatcgtggaggaatggaagttgtg
ctgcatgaagacaaaaaatattatcccaccgcagaggaaatttatggcccagaggtggaa
accattgtgcaggaggaagacacccagccgcttactgaaccaattattaaaccagtgaag
gctaaaaagttttctatgatggagcagggactgccagcaactgtttatgagatggacttc
ctcgccgatctaatggacaatcctgaactgatccggaatgtgactctctgtggccacctg
caccatggaaagacctgttttgtggactgtttgattgagcaaacgcacccagagatccgc
aagcgccatgaccaagatctttgctacacagatattctttttaccgagcaggagagagga
gttggtatgaagagtacacctgtgacaattgtggttccagacaccaaggagaagtcttac
ctgttcaatattatggacacaccaggtcatgttaacttttcagatgaagttacagctgga
tttcggatctctgatggagtggtgttgtttattgatgctgctgagggggttatgctgaac
acagagagactgattaaacatgctgttcaggaacgtcttgccgtcactgtctgcatcaac
aagatagacaggctgattcttgagcttaagctgcctccgactgacgcctattacaaactg
cggcacattgtggatgaagtgaatggactgcttagcatgtattccacagacgagaaccta
attctctctcctctcctgggaaacgtctgttttgctagctcacagtacagcatctgcttt
acattgggatcatttgccaagatttatgctgacacatacggggacatcaattaccaggag
tttgcaaagcgattgtggggagacatctacttcaatccgaaaacccgcaagttcaccaag
aaagcccctacaagcagctcacaacgcagttttgtggagttcgtactggaacctctctac
aagattctggctcaggtggtgggggatgtagacaccactctgccgcagactctagaggag
ctgggaattcatctgaccaaagaggagctgaaactgaacatccgtcccctcctgagactt
gtctgtaaccgcttcttcggggaatttaccggttttgtggatatgtgcgtccagcacatc
ccttcacccaaagcgggggcaagagccaaaattgaacacacctacgcagggggcattgat
tgtgaactaggggaggccatgagtgaatgtgacccagatggccctcttatgtgtcacacc
accaagatgtatagcacagatgatggggtgcagttccatgcatttgggcggttactgagt
ggaacaatccatgctgggcaaccagtcaaagttttgggagagaactatacactggaggat
gaagaggactctcaagtttgcactgtagggaggctgtgggtgtctgtagctaggtatcac
attgaagtgaacagagttccagctggaaactgggtgttgattgagggtgtggaccagcca
attgtgaagacggcaaccatcacagagccacggggcaatgaggaggctcagatttttcga
ccgctaaagttcaacaccacgtccgttattaaaattgctgtggaaccagtcaacccctca
gaattgcccaagatgttggatgggttgaggaaggtcaacaagagctacccttcccttact
accaaggtggaggagtccggggagcatgtgatcctcggtaccggagagctgtatctggac
tgtgtcatgcatgacctccgcaagatgtattcagagattgacattaaggtggcagatccc
gtggttaccttctgcgagactgtagtggaaacctcatcactgaaatgttttgctgagaca
ccaaacaagaaaaataagatcacaatgattgcggagccgctggagaaaggattggctgag
gacatagaaaatgaagtggtgcagatttcctggaacaggaagaagctgggagagtttttt
cagaccaaatatgactgggatttgcttgctgcccgttctatttgggcttttggaccagac
acaactggaccaaatattttggttgatgacacgctcccctccgaggtggataaggcgttg
ctgagttcagtcaaagacagcattgtacagggattccagtggggaacaagagagggtccg
ttgtgtgatgagttgatccgcaatgtcaaatttaagatcttggatgctgttatcgcacag
gagcccctacaccgtggtgggggacagatcatccccacagcccgaagagtggtttactcc
gccttcctaatggcaactcctcgtctaatggagccctattattttgtggaagtacaagcc
cctgcagactgtgtctctgctgtttatactgttttggcccgaagaagagggcatgtgact
caggacgccccaattcctgggtcgcctctttacacaatcaaagccttcatcccagcaata
gattcatttgggtttgagactgacctgcgaacacacacccagggacaagccttctccttg
tctgtcttccatcactggcagattgttcctggagaccctctggataaaagcatcattata
cggcccttggaaccacaaccagcaccacaccttgccagggagttcatgataaagacaagg
cgtaggaagggcctaagcgaggatgtgagtatcagcaaatttttcgacgatcctatgttg
ctggaactggcgaaacaggatgtggtgctaaattatcctatgtaa
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