Xenopus tropicalis (tropical clawed frog): 733513
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Entry
733513 CDS
T01011
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03440
Homologous recombination
xtr03460
Fanconi anemia pathway
xtr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
733513 (brca1)
09124 Replication and repair
03440 Homologous recombination
733513 (brca1)
03460 Fanconi anemia pathway
733513 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xtr01009
]
733513 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
733513 (brca1)
03036 Chromosome and associated proteins [BR:
xtr03036
]
733513 (brca1)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
733513 (brca1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
733513 (brca1)
Protein phosphatases and associated proteins [BR:
xtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
733513 (brca1)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
733513 (brca1)
Multi subunit type E3
BRCC complex
733513 (brca1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
733513 (brca1)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
733513 (brca1)
BRCA1-A complex
733513 (brca1)
BRCA1-B complex
733513 (brca1)
BRCA1-C complex
733513 (brca1)
BRCA complex
733513 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
733513 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
zf-RING_UBOX
BRCT_assoc
zf-C3HC4_2
zf-C3HC4_4
RING_XB3-XBAT31
zf-RING_2
BRCT_2
zf-C3HC4_3
zf-RING_5
zf-Nse
BRCT_3
zf-RING_10
zf-RING_6
zf-MIZ
Prok-RING_4
zf-ANAPC11
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
733513
NCBI-ProteinID:
NP_001107963
Xenbase:
XB-GENE-490624
UniProt:
B0JZF7
LinkDB
All DBs
Position
10:complement(19544261..19614820)
Genome browser
AA seq
1592 aa
AA seq
DB search
MDIEGIRNVISVMQKNLECPICLELMKEPVATKCDHIFCKFCMLQLLSKKKKENVPCPLC
KTEVTRRSLQESHRFKLLVEGLLKIIKAFELDSGCKFFPSQENTVSGFESTIKDVLIKED
QPVVHCKGYRNRKKGILKSKTFEVTGTLLESKPEAQFAKLVTRLTSCRQKKHRKEASPIF
VNCVPDSSECHLLNNESGSGNDRSPLCEKEDTLNPDMEAMVGSDQAECEFSETAERTGSN
LPGSDGPGCITETSAETNVNTAANSNIYAREAEQYLNEHLCRFKQDIADRVHQRNQHCGN
VPFVPNLETNFDEEETIETDFDNQYDDSNPQNIDPLCKVAKLMRRSTERVNEWLLKTNEE
SSTLLAEEDSSFSVFPLQNKEPSEKGSCSSNDLMPVLHKHAEQGTSGSVFDKQAVGVKDK
IFCKVYKRQQKSLPPNNITCVVEVHRDSSFGTGTENKTLRMDQLMCKRKIAHGLNPENLA
ITNGSINIYPDDCISEADVEQDAQSKACSELADADQSELVHCTYTVDGNTPKKRCVESLA
NALETREEQKKLSCERSQKKKCCTWAVQSVASEPETRLLQSSCGHLDLLLVSSQSIDDPK
NVINQVRRSRRLQMLPGLLEKAISNAGFEPKIKNANQQQNGIQSSKFKVKEKNPMSDTVP
SQMKKKDMFCLPFTSDDTDTSMNDGSEEGVPMRKGSTRNHDKVHCNDGDCDTLLCVTESD
VQPNDKETEESELETQQIVKMFKTSKRTSFILDSRAAEAVAEVTLSSDILQVKASYDVEY
RDVSSLGSAKEQSSALTNESSPSSEPKKSSSLPWHKKRKQQAKSKHGKMCRSRRENSKPT
DNRAKSPIINMSHSSNTIGQPADLNSPIHGGTGSIYKQVINHCPTRPNIDGEYINASANG
SQSSVTDKSPAHFNINTNFICDVNSATPDGLLHSMDNAEGNSSLGDTTVHDEGKNAAHPE
SFLPSSVHRSVGLTGEKKCIPKVQSSEEGSSGDDLLGSQGLFCQKSKCVSSGATDQKNSK
NPGNAQRRNLPDFSGSSNSGKYNSREMLCKAVFPSLSQESQCSVSLFSSLSNMSQQSANE
DHKLQGGGLGSPSRTEETTISSDEETLTAAPQDHNQNPDIAEASECESEASHTGDSSLLS
SQDELLNTQQRDYMKDSLKKLQQEMAALEAVLEQHGTQNLAAGTACIPSAEHVTYRQEEA
VEKEIAQGDNSIVRTPPKPDANGSALIGQSTDNGLQSRNRSMSPAPPHFLSQTRAEKNTQ
ERVGPAMGISKVLKKSLVTEHKLEVRPDLETANVMPANPMDAKESSGQSSENKSENPILR
NKCSTSHQGLFSYSMEEAVSPHNPKQSRAEFGIARKSTSPTFASPSRAKVLSVGIKSPVV
SSRRNLSFVASGLNQSELALVQRFSRTTQSILSTRITDSTTHVIMKTDAELVCERTLKYF
QGIAGRKWVVSYEWVVQSFKEGQVLDEYDFEVKGDVINGRNHRGPRRSRLGSDGLLLKDF
EICFSGLFTDMTLDDLEWMVSECGSTVVRDLQFPKNKLNTTSLVIVQTDANTTEIRDYFA
IRKNHKAIVVTREWLLDSIATYRLQKFDTYLA
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atggatattgaagggattcgtaatgtaatttctgtcatgcagaagaatctggagtgccca
atctgcttagagctgatgaaggaaccagttgcaacaaaatgtgatcacatattctgcaaa
ttttgtatgttgcaacttctcagcaaaaagaagaaagaaaatgttccgtgccctttgtgc
aagaccgaagtaaccagaaggagtcttcaggagagccacagattcaaactgctggttgaa
gggctactaaagataataaaagcctttgagcttgactctggatgcaaattttttccaagt
caagaaaacacagtcagtgggtttgagtccacaatcaaggatgtgttgattaaagaagat
cagcccgtagtgcattgcaaaggttacagaaaccgtaaaaaagggatcttgaaaagtaaa
acatttgaagtaactggaactttactggaatccaaacccgaggcacaatttgctaaacta
gttacgagactgacttcttgcagacagaagaagcataggaaagaggcctcacccattttc
gttaattgtgtgcccgattcttctgaatgtcatttattaaataatgaaagtggctcagga
aatgaccgctctccactctgtgagaaagaagacacgctgaatccagatatggaagcaatg
gtgggatcagaccaagctgaatgtgaattttctgaaaccgctgaaaggacaggaagcaat
ttaccggggtctgatggtcctgggtgcattactgaaacatcagcagaaaccaacgtcaac
accgctgctaattctaacatttatgcaagagaagcagagcagtaccttaatgagcatctt
tgcaggttcaagcaagatatcgcagacagagtgcatcaaagaaatcagcattgtggcaat
gttccttttgtaccaaatctggagaccaattttgatgaagaggaaaccatagaaactgac
tttgataaccagtatgatgactctaaccctcagaatattgaccctttatgcaaagttgct
aaactaatgagacggagtacagaaagggtcaatgagtggttgctaaaaacaaatgaggag
tcaagcactttgttagcagaggaagattcttccttcagtgtcttccctttgcaaaataaa
gagccctctgagaaagggtcttgttcctcaaatgacttgatgcctgtactccataaacat
gcagagcagggtacatcaggcagtgtttttgacaaacaagcagtcggcgttaaggacaaa
atattctgcaaagtctataagagacagcaaaaatctttgcctcctaataatataacctgc
gttgttgaggtccatcgtgatagttcttttgggactggtacagaaaataagacattgaga
atggatcagttaatgtgcaaaaggaaaattgcccatggtctaaatcctgaaaacctagct
attacaaatggaagcattaacatttatcccgatgactgtatatctgaggcagatgtagag
caagatgcccaatcaaaggcttgctctgaattagctgatgcggatcagtctgagttggtt
cattgcacatatacagtagatggaaacactccaaaaaaacgctgtgtagagtctttggca
aatgcacttgaaaccagagaagagcaaaaaaaattgtcttgtgaaagaagccaaaaaaaa
aaatgctgtacatgggcagtccagtctgtagcttcagaacctgaaacacgcttactgcaa
agttcttgtgggcacttggatctacttttagtaagttctcaaagtattgatgatcccaaa
aatgtaattaaccaggtaaggaggagcagaaggcttcagatgttgccaggactgttggaa
aaagcaatttctaatgcaggttttgagcctaaaattaagaatgcgaatcaacagcagaat
ggtattcagagttcaaaatttaaggtgaaggaaaaaaatccaatgtctgatacagttccc
tctcaaatgaaaaagaaagacatgttttgtctgccttttacttcagatgatactgacacc
tcaatgaatgacggatcagaggaaggggttcccatgagaaaaggcagtacccggaatcat
gataaagtccattgtaatgatggagattgtgacaccttgctctgtgttacagagagtgat
gtccaaccaaatgacaaggaaaccgaagaatctgaactggaaacccaacaaattgttaaa
atgtttaaaacttctaagcggacatccttcatattagactccagggcagcagaagctgta
gcagaagtcactctatcctcagatatcctacaggtcaaagcttcctatgatgttgaatac
agggatgtgtcctcattaggttcagcaaaagaacaaagcagtgcattgacgaacgaaagt
agtcctagtagtgagcctaaaaaaagcagctcattaccctggcacaagaaaaggaagcaa
caagctaaatcaaaacatggcaaaatgtgcagaagtaggagagagaacagtaaaccaaca
gataatcgtgccaaaagccccataataaatatgagtcattcttcaaatactattggccag
ccagctgatttaaacagccccatccacgggggcactggtagcatatataaacaagtaatc
aaccattgtcctacaaggcccaacattgatggagaatatataaacgcatccgctaatggt
agccaaagttcagtgacagataaatccccagcacattttaatatcaataccaacttcatt
tgtgatgtcaattctgccactcctgatggattgttgcactccatggataacgctgaagga
aactcaagccttggtgatacaactgttcatgatgaaggcaaaaatgcagcacatcctgag
agttttctcccctcgtctgtccatagatcagttgggttaactggggaaaaaaaatgcata
ccaaaggtgcaatcatcagaggaagggtcaagtggtgatgacttgcttggttctcagggt
ctgttttgtcaaaagtcaaagtgcgtatcctctggtgccacagatcagaaaaattctaag
aatccaggcaatgctcagcggaggaacttgccagatttcagtggcagcagcaatagtggc
aaatacaattcacgggaaatgttatgcaaggctgttttcccttctctgagccaagaatct
cagtgttcggtgagcttgttctcctctctgtcaaatatgtctcagcagtctgcaaacgaa
gaccacaagctccagggtggtggtctaggcagtccaagtagaactgaagagacaaccatc
agtagtgatgaagagacactgactgctgcccctcaggaccacaatcagaatcctgacata
gctgaagcatcagaatgtgagagtgaagcaagtcatacaggagattcctctttattgtcc
tcccaggatgagctcctgaacacccagcagcgggattacatgaaggacagcttaaagaaa
ctgcagcaagaaatggctgctttggaagcagtactggagcagcatgggacccagaacctt
gcagcagggacagcatgcatcccttcagctgaacatgtcacatataggcaggaggaggct
gtagaaaaagaaatagctcaaggagataactcaattgtacgaactcctccaaagcctgat
gcaaatgggtcagctttgatagggcagagcacggacaatggcttgcagagcaggaatagg
tcaatgtctccagccccaccacattttctttcccagaccagagctgagaagaatactcaa
gaaagagtaggcccagcaatgggcatatcgaaagtcttgaaaaaatctttggttacagag
cataaactggaagtcagacctgatcttgagacagcaaatgttatgccagccaacccaatg
gatgctaaagaatcttcagggcaaagcagtgaaaacaagagtgagaaccctatcttgcgc
aataaatgttccacatctcaccaaggcttattttcttattctatggaagaggcagtctct
ccacacaacccaaaacaaagcagggcagagtttggcattgcaaggaaatctacctcccca
acttttgcatcccccagtcgagctaaagtcctttctgttggcattaaatctcctgttgtg
tcatcaaggaggaatctgtcctttgtggcttctgggctaaatcaaagtgaactggcatta
gtacaaaggttttcaagaacgacccagagtattttatccacacgaattacagattcgaca
actcacgtcattatgaaaacagatgcagagcttgtgtgcgagagaactctaaagtatttc
caaggaattgccggtagaaaatgggttgtaagctatgaatgggttgtacagtcattcaaa
gagggacaagtccttgatgagtatgactttgaagtgaagggagatgtgatcaatggaaga
aatcatagaggcccaagaagatcacggctgggatccgatggattgctgctaaaagatttt
gaaatttgcttctccggattattcactgacatgacgctagatgacctggagtggatggtg
tctgagtgtgggtccactgtggtgagagatcttcagttcccaaaaaacaaacttaataca
acgtcgcttgtgattgtgcaaaccgatgctaatacaacggaaatcagagattattttgcc
atccggaagaaccacaaggccatagtagtgacgcgggagtggttgctggacagcattgct
acttacagacttcagaaatttgatacttaccttgcataa
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integrated database retrieval system
