Xenopus tropicalis (tropical clawed frog): 734090
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Entry
734090 CDS
T01011
Symbol
plod3
Name
(RefSeq) procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 precursor
KO
K13646
lysyl hydroxylase/galactosyltransferase/glucosyltransferase [EC:
1.14.11.4
2.4.1.50
2.4.1.66
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr00310
Lysine degradation
xtr00514
Other types of O-glycan biosynthesis
xtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
734090 (plod3)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
734090 (plod3)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
xtr01003
]
734090 (plod3)
Enzymes [BR:
xtr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.4 procollagen-lysine 5-dioxygenase
734090 (plod3)
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
734090 (plod3)
2.4.1.66 procollagen glucosyltransferase
734090 (plod3)
Glycosyltransferases [BR:
xtr01003
]
O-Glycan biosynthesis
O-linked Gal type
734090 (plod3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2OG-FeII_Oxy
Anp1
2OG-FeII_Oxy_3
Motif
Other DBs
NCBI-GeneID:
734090
NCBI-ProteinID:
NP_001039229
Xenbase:
XB-GENE-5916631
UniProt:
Q28BS2
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Position
3:150946043..150969124
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AA seq
733 aa
AA seq
DB search
MLGSAAAGFLLFLLCALAGGQAVSKEAVRPDKLLVVTVATDTTEGYERFLRTARHFNYTV
RTLGLGHEWKGGDVARTVGGGQKVRWLKEELEKHSEQDDLVIMFVDSYDVVIAGTPTELL
WKFHQFEHKVVFSAEGFCWPEWSLAESYPPISNGKRFLNSGGFIGFAPQLYRMVQLWKYK
DDDDDQLFYTKVYLDESLREKFDIALDHKSKIFQNLNGAIDEVVLKFERNKVRARNVAYD
TIPVVIHGNGPTKLQLNYLGNYVPNSWTHEGGCEVCDDDLLDLSMLEDDALPQVLLGVFI
EQPTPFLPQFLERLVQLDYPRNRLSLYIHNSEVFHEKHIQAFWENNKDSFTSIKIVGPEE
ALSQGEARDMGMDLCRQDETCDYYFSVDADVVLTNPDTLYILIQENKKVIAPMVSRSGKL
WSNFWGALSPEGYYARSEDYVDIVQGKRAGVWNVPYIAHVYLIKGETLRNELSNKNIFTL
PQMDSDMAFCKSIRDKSVFLHLSNRDEFGRLISTSKYNTSRLHNDLWQIFENPVDWREKY
IHENYTKIFEEDYFEQPCPDVYWFPVFKEVMCDEFVEEMENFGQWSGGKNTDQRLAGGYE
NVPTVDIHMTQVGYQEEWLKFLQEYIAPVTEKLFPGYYTKAKALLNFIVRYRPDEQPSLR
PHHDSSTFTINIALNNKGIDYEGGGCRFLRYNCRVESPRKGWSFMHPGRLTHYHEGLPTT
RGTRYIMVSFVDP
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgctcggttccgctgccgccgggtttctgctttttctgctgtgtgcgctggcggggggg
caggctgtgagcaaggaggcggtacggcccgacaaactgctggtagtcacagtggccaca
gacactacagaagggtatgagcgcttcctacgcaccgcgcggcacttcaactacaccgta
cggaccctgggtctggggcacgagtggaagggaggcgacgttgcccgcacagtgggggga
gggcagaaggtgcgatggctgaaagaagaactagaaaagcacagtgaacaggacgacctg
gtaatcatgtttgtcgacagttacgatgttgtaatagctgggacccctactgagctgctg
tggaagttccatcagttcgagcacaaggtggtcttctccgcggaggggttttgttggccg
gaatggtcgctggcagaaagttacccccccatcagcaatgggaagcgtttcctcaactct
ggagggtttatcggatttgccccccagctctaccggatggttcagctctggaagtacaaa
gatgatgatgatgatcagctgttttacaccaaagtttacttggatgagtcccttagagag
aagtttgatatcgctcttgatcacaagtcaaaaatcttccagaacctgaatggcgctatc
gatgaagttgtcctgaagtttgagaggaacaaagtgcgagctcggaatgtggcatacgac
actattccagttgtgatacacggcaatgggcccacaaagttacagctgaactatcttgga
aattatgtccccaattcctggacacatgagggcgggtgtgaagtgtgtgatgatgacctc
ctggacctgtctatgttggaggatgatgcattgccgcaggtcttgctcggtgtctttatt
gagcagccgactcccttcctgccgcagttcctggaacgactggtgcagttggattatccc
cgcaaccgcctgtcactctacatccacaatagtgaggtttttcatgaaaaacatatccag
gctttctgggagaataacaaggacagttttacaagcattaaaatcgtgggcccagaggaa
gcgctgagccagggggaggccagagacatgggcatggacctgtgccgtcaggatgagacc
tgcgattactacttcagtgtggatgccgatgtggttttaaccaatcctgacacgttgtat
atcctgatccaagagaataagaaggtgattgcacccatggtctcccgcagcggcaaactc
tggtccaacttctggggggccctgagccctgaaggctattacgcccgatctgaagactat
gtggatattgtccaagggaagagggcgggagtctggaacgtaccatacattgcccatgtt
tacctcattaagggggagacattgcggaatgaactatcaaacaagaatatcttcacattg
ccacaaatggactcagacatggctttctgtaagagcattcgggacaagagcgtcttcctg
cacctcagtaacagggacgagtttggccgcttgatttccacctccaagtacaacacatcc
cgtctgcacaacgacctgtggcagatctttgagaacccggtggactggagggaaaaatac
attcacgaaaactataccaagatttttgaggaagattattttgagcagccttgcccagat
gtctactggttcccagtctttaaggaagtgatgtgtgacgagtttgtggaagagatggag
aattttggccagtggtctggcggcaaaaatacggaccagcggctagcgggcggctacgag
aatgtgcccaccgtggatattcacatgacgcaggttgggtaccaggaggagtggctgaag
ttcttgcaggaatacattgcgcctgtcacagagaagctcttccccggctattacacaaag
gccaaggccctgctgaatttcatcgtacgctacagaccggatgagcagccctccctccgc
ccacaccacgactcctccactttcactatcaacatcgccctcaacaataaagggatcgac
tacgagggtgggggctgccgcttcctccgctacaactgcagagtggaatccccccgcaaa
ggttggtccttcatgcacccgggccgtctgactcactaccacgagggtcttcccaccacc
agaggaacccgctacatcatggtctccttcgtggacccttga
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