Xylella taiwanensis: AB672_10055
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Entry
AB672_10055 CDS
T05568
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xtw
Xylella taiwanensis
Pathway
xtw03030
DNA replication
xtw03410
Base excision repair
xtw03420
Nucleotide excision repair
xtw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xtw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB672_10055
03410 Base excision repair
AB672_10055
03420 Nucleotide excision repair
AB672_10055
03430 Mismatch repair
AB672_10055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xtw03032
]
AB672_10055
03400 DNA repair and recombination proteins [BR:
xtw03400
]
AB672_10055
Enzymes [BR:
xtw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB672_10055
DNA replication proteins [BR:
xtw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB672_10055
DNA repair and recombination proteins [BR:
xtw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB672_10055
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB672_10055
MMR (mismatch excision repair)
DNA ligase
AB672_10055
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB672_10055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AXI84252
UniProt:
Z9JHC0
LinkDB
All DBs
Position
complement(2371941..2374436)
Genome browser
AA seq
831 aa
AA seq
DB search
MIPLDPAQRAAELRRRLDEASYHYHVLDQPRIPDVDYDRMLRELDALEAAYPEVATPDSP
TQRVGHTVVSAFAEVRHAVPMLSLGNAFNDEEVTEFVRRITGRLGGTAPAFSAEPKLDGL
AISLRYENGVFIQGATRGDGTTGEDVTANLRTVRAIPLRLQGDRWPRVLEVRGEVYMPRP
DFDAYNIQARLHGWKVLANPRNGAAGSLRQLDPKVTAQRPLSFYVYGVGEVADATPFSRH
SEMLAHLRAWGFPVSSLVELVYGSEGLLDYYRRMGAIRDTLPFDIDGVVYKLDDLAGQRD
MGFVARAPRWAIAHKFPAQEQATTVEAIEIQIGRTGAATPVARLTPVQVAGVTVTSATLH
NADQIARLDVRIGDTVMVRRAGDVIPEVVGVMAENRLPDAAEWRMPVACPVCGSEIVREA
GAAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGGKFIELLVDANVVHGVADLYHLNL
DQLLRLRLVTSAETPHTFLRAAREHVAGVHYQQLEEVLRELGVDLSGHDAVPQYWQVEVL
RAQWPHFDWNRSKIATKWAENLIAAIDRSRETTLERFLFALGIEHVGESTAKALAQWFGD
LSLIRQLPWPLFKCVPDIGAEVARAIGHFMDQPANQQAIDDLLARGVRITDMHPPSSKLR
DALTLANVLQHLDIPKITPLRAVQLTAIAPSLPLLTETSLDVLVQAGVPQAVAQSLTDWF
QCPGNVPLVARVQRLCDALLARLPVADIARIGPLDGQSVVLTGTLASLTREAARARLEML
GARMASSVSQKTSFVVAGEGAGSKLDKARALHVEIWDELRLLAFLEKHGEH
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgatccccctggatcctgcccagcgtgccgccgagttgcgtcgtcgccttgacgaggcc
agctatcactaccacgtactcgatcagcctcgaatcccggacgttgactacgaccggatg
ctgcgtgagctggatgcgctcgaagcagcctatccagaggtggcgactcctgattcacca
acccaacgtgttggtcacactgttgtcagcgcgtttgccgaagtgcgccatgccgtgccg
atgctgtccctgggcaatgcgttcaacgatgaggaagtgactgagttcgtgcgccgtatt
accgggcgtctggggggaacggcgcctgcgttttcggccgagcctaagctcgatggcttg
gcgatcagcctgcgctacgagaacggtgtgttcatccagggggccacccgcggcgatggc
accacgggcgaagatgtcacggccaacctgcgtaccgtgcgtgctatcccgttgcgcttg
caaggtgaccgctggccgcgtgtgttggaggtgcgcggtgaggtgtatatgccgcgtcct
gacttcgatgcctacaacattcaggcccgtctgcacgggtggaaggtgctggccaacccg
cgcaatggtgcggcaggctcgttgcggcagctcgatccaaaagtcaccgcgcagcgccca
ctgagcttctatgtctatggtgtgggcgaagtagctgacgccacaccatttagccgccac
tcggagatgttggcacacctgcgtgcgtgggggtttccggtctcctcactggtggagttg
gtgtacggcagtgaggggctactcgattattaccgccgtatgggcgccatacgcgatacg
ttgccgtttgatatcgatggtgtggtctataagctcgacgatttggctggtcagcgcgac
atgggttttgtcgcgcgtgccccgcgttgggcgattgcccacaaattcccggcccaggaa
caagcgaccaccgtcgaggcgatcgagatccagatcggccgcacgggcgcggcgaccccc
gtggcacgactgacgccggtacaggtggctggggtcaccgtcaccagcgccacactgcat
aacgcagaccagatcgcgcgcttggatgtgcgcatcggtgacaccgtgatggtgcgccgt
gccggcgatgtgattcctgaggtggttggagtcatggccgagaaccgtcttcccgatgct
gcagagtggcgcatgcccgtggcgtgtccagtatgtggttcggagattgtccgcgaggca
ggcgcagcggtatggcgttgctccggtgaactggcctgcccggcacaacgcaaagaggcc
atccgccatttcgtctcgcgccgtgcgatggatgtggaaggacttggtgggaagttcatt
gagttgctggttgatgccaacgttgtacacggcgtggccgacctgtatcacctgaacttg
gatcaactgctgcggttgcgtttggtgacgagtgccgaaacgccgcacacgtttttgcgc
gcagcgcgcgagcatgtggcgggcgtgcattaccagcagttggaagaggtgctgcgtgag
ctgggcgtggatttgtccggtcacgacgcggtgccgcagtactggcaggtcgaggtgttg
cgtgcccaatggccgcacttcgattggaaccgcagcaagattgcgacgaagtgggcggag
aatttgatcgcggcgattgatcggtcacgtgagaccaccttggagcgctttctgtttgcg
cttggcatcgagcatgtcggcgaaagcacagcgaaggcgctggcgcagtggttcggagac
ctgtcactgattcgtcagttgccgtggccattgttcaagtgcgtgccggatatcggtgcc
gaggtggcacgtgcgatcggccactttatggaccagcctgccaaccagcaggcgatcgac
gacctgttggcgcgtggcgtgcgtatcaccgatatgcacccgccctcctcgaagttgcgc
gatgcactgaccctggccaacgtgttgcagcacttggacattcccaagatcaccccacta
cgcgcggttcagttgaccgcgatcgcaccctcgctgccattgttgaccgagaccagtctc
gatgtgctggttcaggcgggtgtgccgcaggccgttgctcaatcgttgaccgattggttt
cagtgtcctgggaacgtgccgttggtcgcgcgcgtacaacgcctgtgtgacgcattactg
gcgcgattgccagtggcggatattgctcggattggcccgctcgacggccagagcgtggta
ctgacggggacattagcgtcactgacccgcgaagccgcccgtgcgcggctagagatgttg
ggagccaggatggccagcagcgtgtcgcagaaaacgagcttcgtcgttgctggagaaggg
gccggttccaaactcgacaaagctcgggccttacacgtggaaatctgggatgaactccgt
ctgctcgcctttctggagaaacatggtgagcactag
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