Xanthomonas vasicola pv. vasculorum: C7V42_08750 Help Entry C7V42_08750       CDS       T05388                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism xva  Xanthomonas vasicola pv. vasculorum Pathway xva03030   DNA replication xva03410   Base excision repair xva03420   Nucleotide excision repair xva03430   Mismatch repair Brite KEGG Orthology (KO) [BR:xva00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     C7V42_08750    03410 Base excision repair     C7V42_08750    03420 Nucleotide excision repair     C7V42_08750    03430 Mismatch repair     C7V42_08750  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:xva03032]     C7V42_08750    03400 DNA repair and recombination proteins [BR:xva03400]     C7V42_08750 Enzymes [BR:xva01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      C7V42_08750 DNA replication proteins [BR:xva03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      C7V42_08750 DNA repair and recombination proteins [BR:xva03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      C7V42_08750    NER (nucleotide excision repair)     GGR (global genome repair) factors      C7V42_08750    MMR (mismatch excision repair)     DNA ligase      C7V42_08750   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       C7V42_08750 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD Nlig-Ia HHH_5 PTCB-BRCT DUF7501 Motif Other DBs NCBI-ProteinID:  AVQ06687 UniProt:  A0AAE8F452 LinkDB All DBs Position 1884252..1886762 Genome browser AA seq 836 aa AA seqDB search MTVSPDPVQRIDTLRRLIEDANYRYHVLDEPLIPDVDYDRLLRELDDLEASHPNLLTPDS PTQRVGAPVSSLLAVKHNSPMLSLGNAFNESEVVDFDRRVRQSLSLPDADSVQYSAELKF DGLAISLTYIDGVLRRAVTRGDGTFGEDVTHSVRAAGGIPPRLRGKVPDSGVIEVRGEVY MPRSSFEKYNEYALLNNIKPLSNPRNGAAGAVRQLDPKESKKRGLKFFAYGGVDLERFTL TETQSDVLQILRDFGFPVAKETSVVLGASGCINFYRDIQDKRDSLPYDIDGVVYKVDRHD WRETLGFVSRAPRWAIAHKFPAQEQLTVVEAIEIQIGRTGAATPVARLKPVHVAGVIVTN ATLHNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEI VREEGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVADIY LLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLETTVVGIGVDMAGEREVPPTWQ ADLLRAGLPKFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSA WFGDLELIRHLPWPLFKRVPDIGGEVARALGHFLDQPGNQQAIDDLLQRGVRIGDTHPPS PKLREALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVAAL LQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQSVVITGTLAALTRDAAKQR LEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVDIWDEARLLAFLSGHGQQP NT seq 2511 nt NT seq  +upstreamnt  +downstreamnt atgactgtcagcccggatcctgtccaacgtatcgataccctgcgtcgtttgatcgaagat gcaaattaccgctatcacgtgctggatgagcctctgattccggacgtcgattacgaccga cttctacgagagttggatgatttggaagctagccatccaaatcttctaacgcctgattcc ccgacgcagcgagttggtgccccagtctcttcgctgctggctgttaagcataattctcca atgttgtcattagggaacgcttttaatgagagcgaagtggtcgacttcgataggcgtgtt aggcaaagcctgtctctgccggacgcggactcggttcaatactccgcggagctaaaattc gatgggctagcgataagccttacttatatcgatggtgtcttgcgccgtgcagttacacgc ggcgatggcacgttcggggaggacgttactcactctgtccgggctgcaggtggtattccg ccgaggctgcgcggtaaagtgccggattcaggggttattgaggtgagaggggaggtttat atgcctcgctctagtttcgagaagtataatgagtatgcgttgttaaataacataaaaccg ttatcaaatcctcgtaacggtgctgcaggtgcggtgaggcagcttgatccaaaagagtcc aaaaagagggggctcaaattcttcgcctatgggggcgttgatctggagaggttcacgcta actgaaactcaatcggacgtgctccaaattttgagagatttcggctttcctgttgccaaa gagacgtcggttgttttaggtgcatctgggtgtattaatttttatagggatattcaagat aagcgcgattccctgccttatgacattgatggggttgtgtacaaagttgatcgtcatgac tggcgagagactttgggttttgtctcccgggcgccccgctgggcaatagcacacaaattt ccggcgcaggagcaattgactgtcgtagaggccatcgagatccagatcggccgcaccggt gcggccacgccggtggcgcgcttgaagccggtgcatgtggccggggtgatcgtcaccaat gccacgctgcataacgccgaccagattgcgcggctggatgtgcgcgtgggcgatacggtg attgtgcgccgcgccggtgacgtgattcccgaagtggctgcggtcgtggccgaccagcgc ccgcccggcacccaggcgtggcagatgcccacgcaatgcccggtgtgcggttcggaaatc gtgcgcgaagagggccaggcggtgtggcgctgctccggcgagttgacctgcccggcgcag cgcaaggaagccttccggcatttcgtctcgcggcgcgcgatggatgtggatggtctgggc gaaaaattcatcgaagtgctggtcgacagcggcttggtgcaaggtgtggccgatatctat ctgctcactgtggatcagctgctgcaactgcgcatgatcagcaccgccgaaagcccgcat gcgttcctgcgcgaagcgcgcgagcatctggccagcggcgcgtatgcacagctggaaacc acggtggtcggcatcggcgtggacatggccggcgagcgcgaagtgccgccgacctggcag gccgatctgctgcgcgcaggtctgccaaagttcgattggaatcgcaaaaaaatcgccacc aagtgggcggagaatctgatcgaggcaatcgaaacatcgcgcgacaccacgctggagcgt ttcctgtttgcgttgggcatcgagcatgtgggcgaaagcacagccaaggcgttgtcggcc tggtttggcgatctggaattgattcgccatctgccgtggccgctgttcaagcgcgtgccg gacatcggtggtgaagtggcgcgtgcgctcgggcactttctcgaccagcccggtaatcag caggccatcgacgatctgctgcagcgtggcgtgcgcatcggcgacacgcatccgccatcg cccaagctgcgcgaggcattgagttttgccagcgtgctcgaagacatggacatccccaag gtgacgccggtgcgcgcgcagcagcttgccgctgcggtggattcgttcgctgcgttgcgc acggccggtgccgatgccttgcaacaggccggcgttcctgcgcccgtggtggccgccttg ctgcaatggctggatcgcccagaaaacgccgcgttggcaagcgccgcgcagcaggcgatg gagacagtgctggcgcgtctaccggaagccgatgcgctgcagaccggcccgctcgatggc cagagcgtggtcatcaccgggaccttggctgcgctcacgcgcgatgccgccaagcagcgg ctggaagcattgggtgccaaggtcgctggcagcgtctccaagaagaccgcgtttctggtg gccggcgaagaagccggttccaagctcgacaaggcgcaatcgctgggcgtggacatctgg gacgaagcccgcttgctggcctttctgagcggacacggccaacagccatga

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