Xylophilus sp. GOD-11R: R9X41_12185
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Entry
R9X41_12185 CDS
T09600
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03030
DNA replication
xyg03410
Base excision repair
xyg03420
Nucleotide excision repair
xyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R9X41_12185 (ligA)
03410 Base excision repair
R9X41_12185 (ligA)
03420 Nucleotide excision repair
R9X41_12185 (ligA)
03430 Mismatch repair
R9X41_12185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xyg03032
]
R9X41_12185 (ligA)
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_12185 (ligA)
Enzymes [BR:
xyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R9X41_12185 (ligA)
DNA replication proteins [BR:
xyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R9X41_12185 (ligA)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R9X41_12185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R9X41_12185 (ligA)
MMR (mismatch excision repair)
DNA ligase
R9X41_12185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R9X41_12185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
DUF4796_N
5_3_exonuc
BRCT_2
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
WPB54933
LinkDB
All DBs
Position
complement(2585034..2587091)
Genome browser
AA seq
685 aa
AA seq
DB search
MSVGQQTKETPRPAEEAAALRAMLDTWAHEYYVLDAPTVPDAEYDKVFQRLQALETEHPD
LISPGSPTQRVVGAVLDGLVPVRHTVPMLSIHTETDTTPAGAQKFDASVRKLLGWAADEA
PVEYTAELKFDGLAINLRYEQGALVQAATRGDGETGEDVTHTIRTVAAIPKRLRRCNAPV
LEVRGEVFMRRDDFDALNERQREAGGKTFVNPRNAAAGVVRQLDANIARQRPLSFFAYGF
GDVQGWEMPATHAQSLQALRAMGIPVNEDSTVAAGAEGLSAFHVGIAARRDSLPFDIDGV
VYKVNDRALQQQLGFKSREPRWAVAHKYPAQEQITTMTGIDVQVGRTGKLTPVARLAPVF
VGGVTVTNATLHNIFEIRKKQVRKGDSVIVRRAGDVIPEVVGKVAGNRPAYVANFHMPRQ
CPVCGSEVVRPKGEANHRCTGGLFCPAQRKEALLHFAARRAMDIEGLGDKLVEQLVDAGI
IRTLPELYKLGVAKLSALDRMAEKSAANIVAALEKSKQTTLPRFLFGLGVRNVGETTAKD
LARHFGLLDNIMDASVEQLLEVPDVGPIVAESVHTFFAQPHNREVVEQLRAAGVTWPEGP
PATRTQLPLAGKTVVLTGTLPSLSRDEARDLLEAAGAKVAGSVSKKTDYVVAGAEAGSKL
DKAQALGVTVLDEDGLRTLLTTAAG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgggccagcagacgaaagagacgccgcggcccgctgaagaagcggcagcgctg
cgcgccatgctcgacacctgggcgcatgagtactacgtgctcgacgcgcccacggttccc
gacgccgagtacgacaaggttttccagcgcctccaggccctggagacggaacatcccgac
ctgatctcgccgggttcacctacccagcgtgtggtgggcgcggtgctcgacggcctggtg
ccggtgcggcacacggtgcccatgctgtccatccacaccgagaccgacaccacaccggcc
ggcgcgcagaagttcgatgcgtccgtgcgcaagctgctcggatgggcggccgatgaggcg
ccggtcgagtacaccgccgaactcaagttcgacggcttggccatcaacctgcgatacgaa
cagggcgccctggtgcaggctgcgacccgcggcgatggcgaaacgggcgaggacgtgacc
cacacgatccgcaccgtggccgccatcccgaagcgcctgcgccgctgcaatgcgccggtg
ctggaagtgcgcggcgaagtcttcatgcggcgcgacgatttcgatgccctcaacgaacgc
cagcgcgaggccggcggcaagactttcgtcaatccgcgcaacgccgctgccggcgtggtg
cgccagttggacgccaacatcgcgcggcagcgtccgctgtccttcttcgcctacggtttc
ggcgatgtccagggttgggaaatgcccgcgacgcatgcgcagagcttgcaggcgttgcgg
gcgatgggcattccggtgaacgaggacagcaccgtggcggccggtgccgaggggctgtcg
gcattccatgtcggcatcgcggcgcgtcgcgacagcctacctttcgacatcgacggcgtg
gtctacaaggtgaacgaccgcgcgttgcagcagcagctcggcttcaagtcccgcgagccg
cgctgggcggtcgcgcacaagtacccggcgcaggaacagatcaccaccatgaccggcatc
gacgtgcaggtcggccgcaccggaaagctcacgcccgtggcgcggctggcgccggtgttc
gtcggcggcgtcacggtgaccaacgccacgctgcacaacatcttcgagattcgcaagaag
caggtacgcaagggcgattcggtgatcgtgcgccgggccggcgacgtgattccggaggtg
gtgggcaaggtcgccggcaaccgtccggcctacgtggccaacttccacatgccgcgccag
tgcccggtctgcggcagcgaggtggtgcggcccaagggcgaggccaatcaccgctgcacc
ggcgggctgttctgcccggcgcagcgcaaggaagcgttgctgcatttcgcggcacgccgc
gcgatggacatcgagggcctgggcgacaagctggtggaacaactggtcgacgccggcatc
attcgcacgctgcccgagctctacaagctcggcgtggccaagctgtcggcgctggaccgc
atggcggagaagtcggcggccaacatcgtggcggcgctggagaaatccaagcagacgaca
ttgccgcgctttctgttcggactgggcgtccgcaatgtgggcgaaaccaccgccaaggac
ctggcgcgccacttcggcctgctcgacaacatcatggatgcatccgtcgagcaattgctg
gaggtgcccgacgtggggcccatcgtggcggaatcggttcataccttctttgcgcagccg
cacaaccgcgaggtggtggaacagctgcgtgcggccggcgtaacgtggcccgagggcccg
cccgcgacgcgcacccaactgccgctggccggcaagacggtggtgctgaccggcacgcta
ccaagcttaagccgcgacgaggcgcgcgatctgctcgaagccgccggcgccaaggtggcc
gggtcggtgagcaaaaagaccgactacgtcgtcgccggcgccgaggcgggcagcaagctc
gacaaggcgcaagccctgggcgtgacggtgctcgacgaggacgggcttcggacgctactg
acgaccgctgccggctga
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