Xylanimonas allomyrinae: ET495_07865
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Entry
ET495_07865 CDS
T05814
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xyl
Xylanimonas allomyrinae
Pathway
xyl03030
DNA replication
xyl03410
Base excision repair
xyl03420
Nucleotide excision repair
xyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ET495_07865 (ligA)
03410 Base excision repair
ET495_07865 (ligA)
03420 Nucleotide excision repair
ET495_07865 (ligA)
03430 Mismatch repair
ET495_07865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xyl03032
]
ET495_07865 (ligA)
03400 DNA repair and recombination proteins [BR:
xyl03400
]
ET495_07865 (ligA)
Enzymes [BR:
xyl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ET495_07865 (ligA)
DNA replication proteins [BR:
xyl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ET495_07865 (ligA)
DNA repair and recombination proteins [BR:
xyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ET495_07865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ET495_07865 (ligA)
MMR (mismatch excision repair)
DNA ligase
ET495_07865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ET495_07865 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
QAY63168
UniProt:
A0A4P6EYN0
LinkDB
All DBs
Position
complement(1719247..1721709)
Genome browser
AA seq
820 aa
AA seq
DB search
MSETTTNRAAAELDEQAAQRRWAELRSLVEADQRAYYEQDSPLVSDAEYDARMRELAALE
AAHPALQTPESPTQRVGGVAATGFATVEHVERMLSLDNVFSVEELRDWDARVARDLGAPD
VGYLSEVKIDGLAIALLYEHGRLTRAATRGDGRTGEDVTVNALRIGDIPQRLAGEGHPAL
VEVRGEIFIPTASFARLNELQEQMRGRAVAQARERSQRAATSRAFDEDAARVAATRRFPT
FANARNAAAGGLRQQLDKKDGLEAEAGLARVEALRLYVHGIGALQWEAGEHVTLDRQSDA
YAHFAQWGLPVSPHNRVVPGVDAVVEMIEHFGTHRHDIEHELDGIVVKVDALADQVRLGA
TSRAPRWAIAYKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVKVAGSTVRQATLHNQD
VVRAKGVRIGDVVVLRKAGDVIPEIVGPVTALADDGFPREDFVMPAACPECGTPLRPMKE
ADVDLRCPNARSCPAQVRGRVEHIGSRGGLDVEALGEVTASALTHPEVPAEPPLRTEAGL
FDLTLDQLLPIEVVVRDAETGLPKVDDDGVARRRTPFRKKLTYTKARRAQAEADGETLPE
WEPSAQAVTLLRELEQAKTKDLWRQIVALNIRHVGPVAARALADWFGSLDAVRAASLDEL
SAVEGVGPVIGAELRAWFEVDWHVEIVESWTAAGVRFATPGHPGPAAMAARAAAGAAPTG
PLAGLTVVVTGSLDGYSRDGAKEAIIAAGGKAAGSVSKKTDYVVVGENAGSKAAKAETLG
VPVLDEAAFTRLLAGGPAALVRDAADDEGAGEDAPDAFAE
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagacgacgacgaaccgggctgcggccgagctcgacgaacaggcggcgcaacgc
cgctgggccgagctgcgcagcctggtcgaggccgaccagcgcgcctactacgagcaggac
tccccgctggtgtccgacgccgagtacgacgcccggatgcgcgagctggcggcgctcgag
gccgcgcaccccgccctgcagactcccgagtcgccgacccagcgcgtgggcggcgtggcg
gcgacgggcttcgcgacggtcgagcacgtcgagcgcatgctctcgctcgacaacgtgttc
tcggtcgaggagctgcgcgactgggacgcccgcgtggcacgcgacctcggcgcgcccgac
gtcggctacctgtccgaggtcaagatcgacggcctcgcgatcgcgctgctgtacgagcac
ggccgcctgacccgggcggcgacccgtggcgacggccgcacgggcgaggacgtcacggtc
aacgcgctgcgcatcggcgacatcccgcagcgcctcgcgggcgaggggcaccccgcgctc
gtcgaggttcgcggggagatcttcatcccgacggcgtccttcgcccggctcaacgagctc
caggagcagatgcgcgggcgcgccgtcgcgcaggcgcgtgagcggtcgcagcgggcggcc
acctcccgcgcgttcgacgaggacgccgcccgcgtcgccgccacgcgccggttcccgacg
ttcgcgaacgcccgcaacgccgccgcgggtggcctgcgtcagcagctcgacaagaaggac
ggcctcgaggccgaggcgggcctggcccgggtcgaggcgttgcggctgtacgtccacggc
atcggagccctccagtgggaggccggcgagcacgtcacgctcgaccggcagtccgacgcc
tacgcgcacttcgcgcagtggggtcttccggtctcgccgcacaaccgcgtcgtcccgggg
gtcgatgcggtcgtcgagatgatcgagcacttcggcacgcaccggcacgacatcgagcat
gagctcgacggcatcgtggtcaaggtcgacgcgctcgccgaccaggtgcgcctgggcgcg
accagccgcgccccgcgctgggccatcgcctacaagtacccgcccgaggaggtcaacacc
cgcctgctcgcgatccaggtcggcgtcggccgcacgggcagggccacgccctacgccgtc
atggagccggtcaaggtcgcgggatccacggtgcgtcaggcgacgctgcacaaccaggac
gtcgtacgggccaagggcgtgcgcatcggcgacgtcgtcgtgctgcgcaaggcgggcgac
gtcatccccgagatcgtcggccccgtcacggcgctcgccgacgacggcttcccgcgcgag
gacttcgtcatgcccgcggcgtgccccgagtgcggcaccccgctgcgccccatgaaggag
gccgacgtcgacctgcgctgccccaacgctcgctcgtgccccgcgcaggtgcgtggccgt
gtcgagcacatcgggtcgcgcggcgggctcgacgtcgaggcgctgggcgaggtcacggcg
tcggcgctcacgcaccccgaggtgccggccgagccgccgctgcgcaccgaggccgggctg
ttcgacctcacgctcgaccagctcctgccgatcgaggtcgtggtccgcgacgccgagacg
ggcctgcccaaggtcgacgacgacggcgtcgcacgccgccgcacccccttccgcaagaag
ctcacctacaccaaggcgcgccgtgcccaggcggaggccgacggcgagaccctccccgag
tgggagccgtccgcgcaggccgtcacgctcctgcgggagctcgagcaggccaagaccaag
gacctgtggcgtcagatcgtcgccctcaacatccggcacgtcgggccggtcgcggcgagg
gcgctcgcggactggttcggctcgctcgacgccgtccgcgccgcgagcctcgacgagctg
tccgcggtcgagggcgtcggcccggtcatcggtgcggagctgcgggcgtggttcgaggtc
gactggcacgtcgagatcgtggagtcgtggaccgccgcgggcgtccggttcgccacgccg
ggccaccccggcccggcggcgatggcggcgcgcgccgccgcgggcgccgcgcccacgggc
ccgctcgcgggcctcaccgtggtggtgacgggatcgctcgacggatactcgcgcgacggg
gcgaaggaggccatcatcgcggccggcggcaaggcggccggttcggtctcgaagaagacc
gactacgtcgtcgtcggcgagaacgcggggtcgaaggccgccaaggccgagacgctcggc
gtgcccgtgctcgacgaggccgcgttcacgcgtctgctcgcgggcggcccggccgccctg
gtacgcgacgccgccgacgacgagggggcaggggaggatgcgccggacgcgttcgcggaa
tga
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