Yersinia aleksiciae: ACZ76_03140
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Entry
ACZ76_03140 CDS
T03994
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yak
Yersinia aleksiciae
Pathway
yak03030
DNA replication
yak03410
Base excision repair
yak03420
Nucleotide excision repair
yak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACZ76_03140 (ligA)
03410 Base excision repair
ACZ76_03140 (ligA)
03420 Nucleotide excision repair
ACZ76_03140 (ligA)
03430 Mismatch repair
ACZ76_03140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yak03032
]
ACZ76_03140 (ligA)
03400 DNA repair and recombination proteins [BR:
yak03400
]
ACZ76_03140 (ligA)
Enzymes [BR:
yak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACZ76_03140 (ligA)
DNA replication proteins [BR:
yak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACZ76_03140 (ligA)
DNA repair and recombination proteins [BR:
yak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACZ76_03140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACZ76_03140 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACZ76_03140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACZ76_03140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
TLE_N
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AKP32612
UniProt:
A0A0T9TQT4
LinkDB
All DBs
Position
complement(644970..646982)
Genome browser
AA seq
670 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEALHPELITSDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAEPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGENIPRRVEVRGEVFMPQLG
FEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGELPRSHI
QRLMQFKAWGLPVSNRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITFPDHCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFELTAG
KLTGLDRMGPKSAQNLISALDKAKQTTFARFLYALGIREVGEATAANLAAHFRNMANLRA
ADIDALKSVPDVGEVVAKHVLNFLSEEHNQKVIEALEQVISWPEPQQIIAKEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTTLGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVID
EAEMIRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataattcagcaaattaatcaactaagaacctcattgcgccatcacgaacat
caataccatgtgctggatgccccagagatccctgatgctgaatacgaccgtctgatgcag
caattgcgtgatttggaagccctacatcccgaattgattaccagtgactcaccaacgcaa
cgggtgggcgcggcccctcttgatgcgtttgagcaagttaagcacgaagtcccgatgctc
tctcttgataacgtgttcgatgaagagagttatttggcgtttgataagcgggtgcatgac
cgcctgaaacgcgcggagccgctgaccttttgctgtgagctaaagttggatggtttggca
gtcagtttactgtatgaagatggcgaactggtcagggcggcaacccgtggtgacggcacc
accggtgaaaatattaccgccaatgtgcgcaccattcgtgccattccgctgcgcttgcag
ggggagaatatccctcggcgggttgaagtgcgcggtgaagtctttatgccacagctgggt
tttgaacaactgaatgacgaggcgcgccgtaaaggtggcaaggttttcgccaacccacgt
aatgccgccgcaggatcattgcgtcagctcgatccccgcatcacagccaaacggcgatta
gctttcttctgttacggcgtcggtttattggatggcggcgagcttccacgcagccatatt
cagcgtctgatgcaatttaaagcctggggtttaccggtcagtaatcgagtgaagctctgc
actggcagcgagcaggttattgctttctatcgccaggttgaacaggaccgcgccggttta
ggcttcgatatcgatggtgtggttatcaaagttgatgatcttgacttgcaagagcagtta
ggctttgtggcgcgcgcgccccgttgggcaaccgcgtttaagtttccagctcaagagcag
ataacgcaagtccgcgaagtggagtttcaggtgggtcgcacgggggctatcacaccagtt
gcccgtctggagccggtgcaggtggcgggtgtgattgtcagcaatgcgacgctgcataat
gccgatgaaattgagcgccttggcttacgcatcggcgataccgtcattgtgcgtcgtgct
ggcgatgtgatcccgcaagtggtgggggtggtgatggaacaacgtcctcaggatgcgaaa
gagatcacattcccagatcactgcccagtgtgtggttctgatatcgagcgagtagaaggc
gaggcggttgcccgctgtaccggtggcttgttctgcgcggcgcaacgtaaagaggcgcta
aagcactttgtttcccgtcgggcgctggatgtggatggcatgggcgataaaattatcgag
caactggtggaaaaacagtatgttgagaaccctgcggacttattcgagctgacggcgggc
aaactgactggactggatcggatggggccgaagtctgcacaaaatctgatttcagcatta
gataaagcaaagcaaaccacgtttgcgcgcttcctatatgccctgggcatccgcgaggtg
ggcgaggcgaccgctgctaatttggctgcacacttccgcaatatggcaaatttgcgtgcg
gctgatattgatgcactcaaaagcgtgccggatgttggtgaagtggtggctaagcacgtg
ctgaacttccttagcgaagagcacaatcaaaaagtgatcgaggcgctggagcaggtgatc
agttggccagagccacaacagattattgctaaagagatcgacagcccatttgccggtaaa
acagttgtcttgactggctcactgacgatcctctcgcgggacgaagcgaaagatcgtctg
accaccttaggggccaaagtgagtggtagtgtctccaagaaaaccgatctggtgatcgcc
ggtgaggctgcgggttcaaaactggcgaaagcgcaggaactggggataacagttattgat
gaagcagaaatgatccgtttgttgggtgaatag
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