Yersinia alsatica: N0H69_09410
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Entry
N0H69_09410 CDS
T08521
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yas
Yersinia alsatica
Pathway
yas03030
DNA replication
yas03410
Base excision repair
yas03420
Nucleotide excision repair
yas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N0H69_09410 (ligA)
03410 Base excision repair
N0H69_09410 (ligA)
03420 Nucleotide excision repair
N0H69_09410 (ligA)
03430 Mismatch repair
N0H69_09410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yas03032
]
N0H69_09410 (ligA)
03400 DNA repair and recombination proteins [BR:
yas03400
]
N0H69_09410 (ligA)
Enzymes [BR:
yas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N0H69_09410 (ligA)
DNA replication proteins [BR:
yas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N0H69_09410 (ligA)
DNA repair and recombination proteins [BR:
yas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N0H69_09410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N0H69_09410 (ligA)
MMR (mismatch excision repair)
DNA ligase
N0H69_09410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N0H69_09410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
5_3_exonuc
TLE_N
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UWM46997
UniProt:
A0ABY5UXC0
LinkDB
All DBs
Position
2128036..2130048
Genome browser
AA seq
670 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQ
RVGAAPLDAFDQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLA
VSLLYEEGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVFMPQAG
FEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHI
QRLMQFKAWGLPVSNRVKLCTGSDQVIAFYRQVEQDRASLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLEQRPQDAKEITFPEHCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAG
KLTGLDRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLDNLRA
ADIEALKSVPDVGEVVAKHVLNFLSEEHNQKVIDALEKVISWPEPQQIIAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVID
EAEMIRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataattcagcaaattaatcaactaagaacctcattgcgccatcatgaacat
caataccatgtgttggatgcaccagagatccctgatgctgaatatgaccgcctgatgcag
caattgcgtgatttggaagcacaacatcctgagctgatcaccaatgattctccgacgcaa
cgggttggggctgcgccacttgatgcctttgaccaggttaaacatgaagtcccgatgctg
tctcttgataacgtcttcgatgaagagagttatctggcattcgacaaacgggtgcatgac
cggctgaaaaccgcagaacccctgacattttgttgtgaactgaagctcgatggtttggcg
gtcagtttattgtatgaagagggcgaactggtcagggcagcgactcgtggtgatggcacc
accggggagaatattaccgtcaatgtgcgcactattcgtgctattcccctgcgcttgcat
ggagataacatcccacggcgagtcgaagtgcgtggtgaagtgtttatgccacaggctggg
tttgagcaacttaacgaagaggcgcgtcgcaaagggggcaaagtttttgccaatccacgc
aatgcggcggcgggctcgttgcgccagcttgacccgcgaatcactgctaaacggccatta
actttcttctgctacggtgtgggtttattggatggtggcgagctgccgcgcagccatatt
cagcggttgatgcaattcaaagcctggggcttgccggtcagcaatagagtcaaattgtgc
actggcagtgaccaggttattgctttttatcgccaagttgaacaagaccgcgccagttta
ggttttgatattgatggtgtggttatcaaggttgattctctcgatttgcaagagcaactg
ggctttgtggcccgcgcaccgcgctgggcaacggcatttaaattcccggcacaagagcag
ataacgcaagttcgtgaagtggagtttcaggtagggcgcaccggcgctattaccccagtg
gctcgtctggaaccggtacaggttgctggcgtgattgtcagcaatgcgacgctacataat
gccgatgaaattgagcgtcttggcttgcgtattggcgataccgtgattgtccgccgggcc
ggtgatgttattccacaagtggtgggtgtagtgctggaacagcgccctcaggatgccaaa
gagattactttccccgaacattgcccggtatgcggctctgatatcgagcgggttgagggt
gaggcggttgctcgctgtaccggtggcttattctgtgcagcgcaacgtaaagaagcgctg
aagcactttgtctcacgtcgggcgttggatgtggacggtatgggcgacaaaattatcgag
caactggtggaaaaacagtatgtcgagaacccggcagatttattcactttgactgcgggc
aaattaaccggtcttgatcggatggggccaaaatccgcacaaaatctgattgtggcgttg
gagaaggcgaagcagaccacttttgcgcgcttcctctatgcgttgggaattcgcgaagtc
ggtgaggccaccgccgccaatttggccgctcatttccgtaatctggataatcttcgggcg
gcagatatcgaagcattaaaaagtgtgccggatgtcggtgaggtggtggctaaacacgtg
cttaacttcctgagtgaagaacataatcagaaggtgatcgacgcgctcgaaaaagtgatc
agttggcctgagccgcagcaaatcattgccgaagagatagacagcccattcgccggtaaa
accgtggtgctgaccggctcgctcactattctctcacgcgacgaagccaaagatcgtctg
acggctttgggcgctaaagtgagtggtagcgtctcgaaaaagaccgatctggtgatcgcc
ggtgaagctgcgggatcaaaattggttaaagcgcaggaacttgggattaccgtgattgat
gaagctgaaatgatccgtttattaggcgaataa
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