Yersinia alsatica: N0H69_21715
Help
Entry
N0H69_21715 CDS
T08521
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yas
Yersinia alsatica
Pathway
yas03030
DNA replication
yas03410
Base excision repair
yas03420
Nucleotide excision repair
yas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N0H69_21715 (ligB)
03410 Base excision repair
N0H69_21715 (ligB)
03420 Nucleotide excision repair
N0H69_21715 (ligB)
03430 Mismatch repair
N0H69_21715 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yas03032
]
N0H69_21715 (ligB)
03400 DNA repair and recombination proteins [BR:
yas03400
]
N0H69_21715 (ligB)
Enzymes [BR:
yas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N0H69_21715 (ligB)
DNA replication proteins [BR:
yas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N0H69_21715 (ligB)
DNA repair and recombination proteins [BR:
yas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N0H69_21715 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N0H69_21715 (ligB)
MMR (mismatch excision repair)
DNA ligase
N0H69_21715 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N0H69_21715 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH
DUF3701
HHH_2
HHH_5
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UWM45202
LinkDB
All DBs
Position
complement(4796727..4798424)
Genome browser
AA seq
565 aa
AA seq
DB search
MNVQNFKMLSLIIIGFIHWEVRAESICPEWSERRMSDEINLLDQQLNKWDIAYHQQGISL
LDDNIYDQLQDKLRGWRECRELPDKTNNRPIPGNEKQLHPVAHTGLKKLKDETALTNWMS
GRKNLWVQPKVDGVAVTLVYQAGKLTQLLSRGNGLKGQSWIDKAPFISAIPQYIAMAPPL
LTLQGELFLQMEGHQQAQSGGVNARASVAGALMRKYASPLLGKLGIFIWAWPDGPKNMLE
RTTRLQIMGFPLATQYSKLATSSEDVIQWREHWYRAPLPFVTDGVVIRQEEEPAGRYWRS
ASGNWSVAWKYPPVQQLTEIQDIHFTIGRTGKITVVLQVSPVKIDDKWIRRVNIGSMARW
RQWNITSGDQVTIALAGQGIPRLDKVVWRVGQRHEFNPPIADRFHQLSCFRLPPLECQPQ
FIARLTWLSGPNGLDMQSIGGKFWQEIVYHGFINNMVGWLSLTAEQIATVPGIGPTRAEK
IYQQFQSTKQKPFSQWLPALGFPQGVPVGTQWHSLQQRNIAEWRLISGIGQVRAKQINNF
LYHPEVQALADFLSQQGIAGFRPEE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgcaaaattttaaaatgttaagcctaataattattggttttatccattgggag
gttagggctgaatctatctgcccggaatggtcggaaagacgaatgtctgatgaaattaat
ctcttggatcaacaactgaataagtgggatatagcctatcaccagcaaggaattagtctg
ctggatgacaatatttacgatcaattgcaggataaattgcggggttggcgggagtgccgc
gagctgcccgataaaacgaataataggcccataccaggcaatgagaaacagcttcatcct
gtggcgcataccggattaaaaaaacttaaagatgagactgcgctgactaactggatgtcg
ggaaggaaaaatctttgggtacaacctaaggttgatggcgttgcagttacgctggtatat
caggctggaaaactaacacagctccttagccgggggaatggcttgaagggtcagagttgg
attgataaagcgccattcatttctgctattccacaatatattgccatggctccccctcta
ttaactttgcagggggagctattcctacagatggaaggccaccaacaagcccaatctggg
ggagtcaatgccagagcttcagttgcaggagctctgatgcgcaagtatgcatcgccattg
ctgggcaaactgggcatatttatttgggcatggccggatgggcccaagaacatgctggag
agaaccacacgattgcaaataatgggcttcccgttggctactcaatacagcaaattggcg
acttcaagtgaggatgttattcagtggcgagagcactggtatcgagcgccactgcctttc
gtgacggatggtgttgttatccgccaagaagaggaacccgcagggcgttattggcgatca
gcatcaggaaattggtcggtggcgtggaaatatccacctgttcagcaactaactgaaatc
caagatatccattttaccattgggcgtacgggtaagatcactgtggttttacaggtttca
cccgtaaaaattgatgataaatggattcgacgcgtgaatattgggtctatggcgcgctgg
cggcagtggaatattacctctggagatcaagttaccatcgcattggccgggcagggtatt
ccgcggctcgataaggtcgtttggcgtgtcggccaaaggcatgagttcaacccaccgata
gccgatagatttcatcagttgagttgtttccgcttaccgcccctcgaatgtcaaccgcag
tttatagcgcgtttaacatggctcagtggccctaacgggctggatatgcaaagtattggc
ggtaaattctggcaagagattgtctatcatgggtttattaataacatggttgggtggtta
tcactgactgccgagcaaatagctactgttcctggtatcgggccaacacgagcagaaaaa
atttatcaacaatttcaaagcacaaagcagaaacctttttctcagtggttgccagcatta
ggattcccacagggagtgcccgttggtactcagtggcactctttacagcaacgtaacatt
gccgaatggcgtttaatttcggggattgggcaggtacgggcaaagcagattaacaatttt
ttataccacccagaagtgcaagcactggcagattttttatcgcaacagggaattgcaggt
ttcaggcccgaagagtga
DBGET
integrated database retrieval system
