Yersinia enterocolitica (type O 5) YE53/03: YE5303_09681
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Entry
YE5303_09681 CDS
T03739
Symbol
dnaL
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03030
DNA replication
yee03410
Base excision repair
yee03420
Nucleotide excision repair
yee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YE5303_09681 (dnaL)
03410 Base excision repair
YE5303_09681 (dnaL)
03420 Nucleotide excision repair
YE5303_09681 (dnaL)
03430 Mismatch repair
YE5303_09681 (dnaL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yee03032
]
YE5303_09681 (dnaL)
03400 DNA repair and recombination proteins [BR:
yee03400
]
YE5303_09681 (dnaL)
Enzymes [BR:
yee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YE5303_09681 (dnaL)
DNA replication proteins [BR:
yee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YE5303_09681 (dnaL)
DNA repair and recombination proteins [BR:
yee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YE5303_09681 (dnaL)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YE5303_09681 (dnaL)
MMR (mismatch excision repair)
DNA ligase
YE5303_09681 (dnaL)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YE5303_09681 (dnaL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CCQ39677
LinkDB
All DBs
Position
1419013..1421031
Genome browser
AA seq
672 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRADPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDKLPRRVEVRGEVFMPLAG
FEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHI
QRLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITFPEHCPMCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAG
KLTGLDRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRA
ADIEALKSVPDVGEVVARYVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVID
EAEMIRLLGESS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaataattcagcaaattaatcaactaagaacctcattgcgccatcacgaacat
ctgtaccatgtgttggatgcaccagagatccctgatgctgaatatgaccgcctgatgcag
caattgcgtgagctggaagcacaacatcctgaattgatcaccaatgattcaccgacccaa
cgagtgggtgctgcgccgcttgatgctttcgagcaggtaaaacacgaagtcccgatgctc
tctctcgataacgtatttgatgaagaaagctatctggcttttgacaaaagagtccatgac
cggttgaaacgtgccgacccgctgacattctgctgtgaattgaagcttgacggtttagcg
gtgagtttattgtacgaagatggcgaattggtcagagcggcaacgcgtggtgatggcact
accggtgagaatattaccgccaatgtacgcactatccgtgcaatcccgctgcgtttgcag
ggcgataaactcccacgacgagtcgaagttcgcggtgaggtttttatgccattggcgggt
ttcgagcagcttaacgatgaggctcgtcgcaaaggggggaaagtttttgctaacccgcgt
aatgctgctgctggatcattgcgccagcttgatcctcgcatcacggccaaacggccattg
actttcttctgctatggcgtcggtttattggagggcggcgaacttccccgcagccatatt
cagcgccttatgcaattcaaggcctggggcttaccggtcagtgatcgagtgaaattatgc
actggcagcgagcaagtgattgctttctatcgtcaagtcgaacaagaccgtggtggttta
ggttttgatattgatggggtggttatcaaagttgattcactcgacttacaggaacagctg
ggctttgtcgcgcgcgcacctcgctgggctacagcatttaaattcccggcacaagagcag
ataacgcaagtccgtgaagtggagtttcaggtggggcgtacgggcgcaattacgccagtt
gcgcggctggaaccggtgcaagtggcaggtgtgattgtcagcaatgcaaccttgcataat
gccgatgaaattgagcgtttaggcttacgtatcggcgataccgtgattgtccgtcgcgcc
ggcgatgttattccacaagtggtgggcgtggtgatggatcaacgcccgcaggatgccaaa
gagatcactttccctgagcactgcccgatgtgtggttctgatatcgagcgggttgagggg
gaagcggttgcccgttgcactggtgggttattctgtgccgcacaacgtaaagaggcactg
aagcattttgtctcgcgccgcgcactggatgtcgatggcatgggcgacaagattatcgaa
caattagtagaaaaacagtatgttgagaacccagctgatttatttacgctgactgcgggc
aagctgacgggtcttgaccggatgggaccgaagtcggctcaaaatctgattgtggcgctg
gaaaaggcaaaacagacgacttttgcccgcttcctctatgcgctgggcattcgcgaagtc
ggtgaggcgacagcggctaatttggctgctcatttccgtaatctggaaaacctacgtgct
gctgatatcgaggcattaaaaagtgtgccggatgtcggggaagtggtggccaggtacgtg
gtgaacttccttggtgaagagcacaatcagaaagtgatcgaagcgctggaaaaagtgatc
acttggcccgagccacagcaaattatagccgaagagatagacagcccattcgcgggtaaa
actgtggttctgaccggttcactgactatcctctcacgggacgaagccaaagatcgcttg
gccgctttgggggccaaagtcagtggcagtgtttccaaaaaaactgatctggtgattgcg
ggtgaagcggcgggatcgaaactggcgaaagcacaggaactgggaattacagttatcgat
gaagcggaaatgatccgtttgctcggtgagtcgtcctaa
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