KEGG   Yersinia enterocolitica (type O 5) YE53/03: YE5303_09681
Entry
YE5303_09681      CDS       T03739                                 
Symbol
dnaL
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
yee  Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03030  DNA replication
yee03410  Base excision repair
yee03420  Nucleotide excision repair
yee03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:yee00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YE5303_09681 (dnaL)
   03410 Base excision repair
    YE5303_09681 (dnaL)
   03420 Nucleotide excision repair
    YE5303_09681 (dnaL)
   03430 Mismatch repair
    YE5303_09681 (dnaL)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yee03032]
    YE5303_09681 (dnaL)
   03400 DNA repair and recombination proteins [BR:yee03400]
    YE5303_09681 (dnaL)
Enzymes [BR:yee01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     YE5303_09681 (dnaL)
DNA replication proteins [BR:yee03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     YE5303_09681 (dnaL)
DNA repair and recombination proteins [BR:yee03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     YE5303_09681 (dnaL)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     YE5303_09681 (dnaL)
   MMR (mismatch excision repair)
    DNA ligase
     YE5303_09681 (dnaL)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      YE5303_09681 (dnaL)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc
Other DBs
NCBI-ProteinID: CCQ39677
LinkDB
Position
1419013..1421031
AA seq 672 aa
MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRADPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDKLPRRVEVRGEVFMPLAG
FEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHI
QRLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITFPEHCPMCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAG
KLTGLDRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRA
ADIEALKSVPDVGEVVARYVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVID
EAEMIRLLGESS
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggaatcaataattcagcaaattaatcaactaagaacctcattgcgccatcacgaacat
ctgtaccatgtgttggatgcaccagagatccctgatgctgaatatgaccgcctgatgcag
caattgcgtgagctggaagcacaacatcctgaattgatcaccaatgattcaccgacccaa
cgagtgggtgctgcgccgcttgatgctttcgagcaggtaaaacacgaagtcccgatgctc
tctctcgataacgtatttgatgaagaaagctatctggcttttgacaaaagagtccatgac
cggttgaaacgtgccgacccgctgacattctgctgtgaattgaagcttgacggtttagcg
gtgagtttattgtacgaagatggcgaattggtcagagcggcaacgcgtggtgatggcact
accggtgagaatattaccgccaatgtacgcactatccgtgcaatcccgctgcgtttgcag
ggcgataaactcccacgacgagtcgaagttcgcggtgaggtttttatgccattggcgggt
ttcgagcagcttaacgatgaggctcgtcgcaaaggggggaaagtttttgctaacccgcgt
aatgctgctgctggatcattgcgccagcttgatcctcgcatcacggccaaacggccattg
actttcttctgctatggcgtcggtttattggagggcggcgaacttccccgcagccatatt
cagcgccttatgcaattcaaggcctggggcttaccggtcagtgatcgagtgaaattatgc
actggcagcgagcaagtgattgctttctatcgtcaagtcgaacaagaccgtggtggttta
ggttttgatattgatggggtggttatcaaagttgattcactcgacttacaggaacagctg
ggctttgtcgcgcgcgcacctcgctgggctacagcatttaaattcccggcacaagagcag
ataacgcaagtccgtgaagtggagtttcaggtggggcgtacgggcgcaattacgccagtt
gcgcggctggaaccggtgcaagtggcaggtgtgattgtcagcaatgcaaccttgcataat
gccgatgaaattgagcgtttaggcttacgtatcggcgataccgtgattgtccgtcgcgcc
ggcgatgttattccacaagtggtgggcgtggtgatggatcaacgcccgcaggatgccaaa
gagatcactttccctgagcactgcccgatgtgtggttctgatatcgagcgggttgagggg
gaagcggttgcccgttgcactggtgggttattctgtgccgcacaacgtaaagaggcactg
aagcattttgtctcgcgccgcgcactggatgtcgatggcatgggcgacaagattatcgaa
caattagtagaaaaacagtatgttgagaacccagctgatttatttacgctgactgcgggc
aagctgacgggtcttgaccggatgggaccgaagtcggctcaaaatctgattgtggcgctg
gaaaaggcaaaacagacgacttttgcccgcttcctctatgcgctgggcattcgcgaagtc
ggtgaggcgacagcggctaatttggctgctcatttccgtaatctggaaaacctacgtgct
gctgatatcgaggcattaaaaagtgtgccggatgtcggggaagtggtggccaggtacgtg
gtgaacttccttggtgaagagcacaatcagaaagtgatcgaagcgctggaaaaagtgatc
acttggcccgagccacagcaaattatagccgaagagatagacagcccattcgcgggtaaa
actgtggttctgaccggttcactgactatcctctcacgggacgaagccaaagatcgcttg
gccgctttgggggccaaagtcagtggcagtgtttccaaaaaaactgatctggtgattgcg
ggtgaagcggcgggatcgaaactggcgaaagcacaggaactgggaattacagttatcgat
gaagcggaaatgatccgtttgctcggtgagtcgtcctaa

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