Yersinia entomophaga: PL78_16050
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Entry
PL78_16050 CDS
T09771
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yeg
Yersinia entomophaga
Pathway
yeg03030
DNA replication
yeg03410
Base excision repair
yeg03420
Nucleotide excision repair
yeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PL78_16050 (ligA)
03410 Base excision repair
PL78_16050 (ligA)
03420 Nucleotide excision repair
PL78_16050 (ligA)
03430 Mismatch repair
PL78_16050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yeg03032
]
PL78_16050 (ligA)
03400 DNA repair and recombination proteins [BR:
yeg03400
]
PL78_16050 (ligA)
Enzymes [BR:
yeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PL78_16050 (ligA)
DNA replication proteins [BR:
yeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PL78_16050 (ligA)
DNA repair and recombination proteins [BR:
yeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PL78_16050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PL78_16050 (ligA)
MMR (mismatch excision repair)
DNA ligase
PL78_16050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PL78_16050 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ANI31330
UniProt:
A0A3S6F588
LinkDB
All DBs
Position
3571396..3573414
Genome browser
AA seq
672 aa
AA seq
DB search
MESIIQQLNQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITADSPTQ
RVGAAPLDAFDQVRHEVPMLSLDNVFDEESYLAFNKRVNDRLKIAEPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVFMPQAG
FEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPRSHF
SRLQQFKAWGLPVSDRVKLCTGAEQVIDFYHQVEQDRATLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQVTQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLDERPANAREVIFPDRCPVCGSDVERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVTNPADLFTLTAG
KLTGLDRMGPKSAQNLVAALEKAKETTFARFLYALGIREVGEATAANLAAHFRTLDNLRS
ADVEALKAVPDVGEVVAKHVLNFLSEEHNQQVIFQLEHVVRWPEPQRIIAEEIDSPFAGK
TVVLTGSLNILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIKVID
EAEMIRLLGESE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaacttaatcaactgcgagcctcactgcgccatcacgaacat
caatatcatgtgctggatgcgccagaaattcccgatgcagaatatgaccgtctgatgggc
gaactgcgggagctggaagcgcaacaccccgaattgattaccgcagattctcctacccag
cgtgtcggtgctgcacctctggatgcctttgatcaggtacgccacgaagtccctatgctg
tctctggataacgtatttgatgaagaaagctatctggctttcaataaacgggttaatgac
cggctgaaaatcgcagagccgctgaccttttgctgtgagctaaaattagacggtctggcg
gtcagtttgctgtatgaggacggcgagttagtccgcgctgctacccgtggtgatggtacg
accggtgagaatattaccgccaacgttcgcactattcgcgcgattcctttgcgtttgcac
ggtgacaatattccgcgtcgcgtggaagtccgtggcgaagtctttatgccgcaggcgggt
tttgaacaactgaacgaagaggcgcgacgtaaaggtggcaaaatttttgccaatccgcgt
aacgccgccgctggctctttacggcagctcgatccgcgaattacggccaaacggccatta
acctttttctgttatggcgtcggtttgatggacggcggcgaactgccccgtagccatttt
tcacgcttgcagcagtttaaagcctggggtttgccggtcagcgatcgcgtcaaactttgt
accggggctgaacaggttattgatttttatcatcaggttgagcaagatcgtgccactctg
gggtttgatatcgatggcgtagtgatcaaggttgactcgctggatttacaggaacaactg
ggctttgttgccagagcgccacgctgggcaaccgcgtttaaattcccggcgcaggaacaa
gttactcaggtccgcgaagtggagtttcaggttggccgcaccggtgctatcacgccggta
gctcgtctggagccggtgcaggtggcgggggtgattgttagcaatgcgaccttgcataat
gcagatgaaattgagcgtctgggtctgcgtattggcgataccgttattgtgcgtcgcgcc
ggtgatgttattccgcaggtagtcggcgtggtgctggatgaacggccagccaatgcgcgg
gaagtgatattccccgatcgttgcccggtatgtggctctgatgtcgaacgcgttgaaggt
gaagccgtggcgcgttgcaccggcggtttgttctgcgccgcgcagcgtaaagaagcgctg
aagcacttcgtttctcgtcgcgcgttagacgtagacggtatgggcgataaaattatcgaa
caattggtggagaaagaatatgtcaccaatccagccgatttgtttacgctgacggccgga
aaactgaccggtttggatcgtatggggccaaaatcggcacagaatctggtcgccgccttg
gaaaaagccaaggaaactacctttgcccgcttcctctatgcattagggattcgtgaggtt
ggtgaagcaactgctgccaatctggccgcgcacttccgcacgttggataatctgcgttca
gcggatgttgaagcgctgaaagccgtaccggacgtgggtgaagtggtcgctaaacacgtg
ctgaatttcctatcggaagaacataaccagcaggttatctttcagcttgaacacgtggtg
cgctggccggagccacagcggattattgcggaagagatcgacagtccttttgctggaaaa
accgtggtattgaccggctctctgaatattctttccagagatgaagccaaggatcgcctt
accgcgttaggcgcgaaagttagcggcagcgtgtcgaagaaaaccgatttggtgatagcc
ggtgaagccgcgggctcaaagctggcaaaagcgcaggaattgggcattaaggtgatcgat
gaagccgagatgatccgtttgctgggcgaatcagaataa
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