Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0 8): YE1211
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Entry
YE1211 CDS
T00469
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yen
Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
Pathway
yen03030
DNA replication
yen03410
Base excision repair
yen03420
Nucleotide excision repair
yen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YE1211 (ligA)
03410 Base excision repair
YE1211 (ligA)
03420 Nucleotide excision repair
YE1211 (ligA)
03430 Mismatch repair
YE1211 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yen03032
]
YE1211 (ligA)
03400 DNA repair and recombination proteins [BR:
yen03400
]
YE1211 (ligA)
Enzymes [BR:
yen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YE1211 (ligA)
DNA replication proteins [BR:
yen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YE1211 (ligA)
DNA repair and recombination proteins [BR:
yen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YE1211 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YE1211 (ligA)
MMR (mismatch excision repair)
DNA ligase
YE1211 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YE1211 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
TLE_N
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CAL11304
UniProt:
A1JLA4
LinkDB
All DBs
Position
1350408..1352426
Genome browser
AA seq
672 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRADPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPLAG
FEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHI
QRLMQFKAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITFPEHCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAG
KLTGLDRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRA
ADIEALKSVPDVGEVVAKHVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVID
EAEMIRLLGESS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaataattcagcaaattaatcaactaagaacctcattgcgccatcacgaacat
ctgtaccatgtgttggatgcgccagagatccctgatgctgaatatgaccgcctgatgcag
caattgcgtgagctggaagcacaacatcctgaattgatcaccaatgattcaccgacccaa
cgagtgggcgctgcgccgcttgatgctttcgagcaggtaaaacacgaagtcccgatgctc
tctctcgataacgtatttgatgaagaaagctatctggcttttgacaaaagagtccatgac
cggttgaaacgtgccgatcctctgacattctgctgtgaattgaagcttgacggtttagcg
gtgagtttattgtacgaagatggcgagctggtcagagcggcaacacgtggtgatggcact
accggtgaaaatattaccgccaatgtccgcactatccgtgcaatcccgttgcgtttgcag
ggcgataatatccctcgacgagtcgaagttcgcggtgaggtttttatgccattggcgggt
ttcgagcagcttaacgatgaggctcgtcgcaaaggggggaaagttttcgccaacccgcgt
aacgctgccgccggttcattgcgccaacttgacccacgtattacggctaaacggccatta
actttcttctgctatggtgtcggtttattggagggcggcgaacttccccgcagccatatt
cagcgcctgatgcaatttaaggcctggggcttaccggtcagtgagcgggtcaaattatgt
actggtagcgagcaagtgattgctttctatcgtcaagtcgaacaagaccgtggcggttta
ggttttgatattgatggggtggttatcaaagttgattcactcgacttacaggaacagctg
ggctttgtcgcgcgcgcacctcgctgggctacagcatttaaattcccggcacaagagcag
ataacgcaagttcgtgaagtggagtttcaggtggggcgtacgggcgcaattacgccagtt
gcgcggctggaaccggtgcaagtggccggtgtgattgtcagcaatgcaaccttgcataat
gccgatgaaattgagcgtttgggcttacgtatcggtgataccgtgattgtccgtcgcgcc
ggtgatgttattccgcaagtggtgggcgtggtgatggatcaacgcccgcaggatgccaaa
gagatcactttccctgagcactgcccggtgtgtggttctgatatcgagcgggttgagggg
gaagcggttgcccgttgcactggtgggttattctgtgccgcacaacgtaaagaggcactg
aagcattttgtctcgcgccgcgcgctggatgtcgatggcatgggcgacaagattatcgaa
caattggtagaaaaacagtatgttgagaacccagctgatttatttacgctgactgcgggc
aagctgacgggtcttgaccggatggggccgaagtcggctcaaaatctgattgtggcgctg
gaaaaggcaaaacagacgacttttgcccgcttcctctatgcgctgggcattcgcgaagta
ggtgaggcgacagcggctaatttggctgctcatttccgtaatctggaaaacctacgtgct
gctgatatcgaggcattaaaaagtgtgccggatgtcggggaagtggtggccaagcatgtg
gtgaacttccttggtgaagagcacaatcagaaagtgatcgaagcgctggaaaaagtgatc
acttggcccgaaccgcagcaaattatagccgaagagatagacagcccattcgccggtaaa
actgtggttctgaccggctcactgactatcctctcacgggacgaagccaaagatcgcctg
gccgctttgggggccaaagtcagtggcagtgtttccaaaaaaactgatctggtgattgcg
ggtgaagcggcgggatcgaaactggtgaaagcgcaggaactgggaattacagttatcgat
gaagcggaaatgatccgtttgctcggtgagtcgtcctaa
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