Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C0049
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Entry
YE105_C0049 CDS
T01480
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03030
DNA replication
yep03410
Base excision repair
yep03420
Nucleotide excision repair
yep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YE105_C0049
03410 Base excision repair
YE105_C0049
03420 Nucleotide excision repair
YE105_C0049
03430 Mismatch repair
YE105_C0049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yep03032
]
YE105_C0049
03400 DNA repair and recombination proteins [BR:
yep03400
]
YE105_C0049
Enzymes [BR:
yep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YE105_C0049
DNA replication proteins [BR:
yep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YE105_C0049
DNA repair and recombination proteins [BR:
yep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YE105_C0049
NER (nucleotide excision repair)
GGR (global genome repair) factors
YE105_C0049
MMR (mismatch excision repair)
DNA ligase
YE105_C0049
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YE105_C0049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
DUF3701
HHH
HHH_5
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADZ40547
LinkDB
All DBs
Position
60596..62293
Genome browser
AA seq
565 aa
AA seq
DB search
MNVHKMKILSLLMVSFISWQIRAESVCPEWTEERMSGEMHILEKQLDQWNIAYHQQGISP
IADDIYDQLQDKLHRWRLCLGLPDKTDIRPIPGNGKMLHPVAHTGLKKLKDEAALISWMT
GRKDLWVQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPPL
LTLQGEVFLQMEGHQQAQSGGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPKSMVE
KSRLLQEMGFPLTAHYSEPVISSSDVAQWRDRWFKMPLPFVTDGVVIRQENVPAGRYWQA
TPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKWIRRVNIGSIARW
RLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIVPPDADKFHQLTCFRRLPFECEPQ
FLSRLAWLSGTNGLDMQSVGNGLWRELIHHGFINGLLDWLSLSVEQIAAVPGIGQGRAEK
IYQQFQRARQQPFSQWLQALGFPQGIPLDSSWHSLRQRGIAEWRLMPGIGQVRAKQINHF
LHHPEVQMMADFLSQQGIAGFSPEE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgcacaaaatgaaaatactaagcctactgatggttagttttataagttggcaa
atcagagcagaatctgtctgccctgaatggacagaagaaagaatgtcgggagagatgcat
atcttggagaagcagctagatcagtggaatatagcttatcaccagcagggtattagcccg
attgcagatgatatttacgatcagttgcaggataaattgcataggtggcgtttatgtctt
gggttacctgataaaacggatatcagacccataccgggtaatggaaagatgcttcatcct
gttgcccacaccggcttaaaaaaacttaaagatgaagctgcactcattagttggatgaca
gggcgaaaagacctttgggtgcaacccaaaatagacggcgttgcagtcacattggtatat
caggcggggaaattaacccaagttttgagccgaggaaatggtttgaaaggccaaaattgg
gcggataaagcaccatttatctctgctattcctcaatatattgccagcgctcccccctta
ttaactctgcaaggggaagtatttctgcaaatggagggccatcaacaagcgcaatcagga
ggcgccaatgccagagcatctgttgcaggggctctgatgcgtaagtctgtatccccatta
ttagctaaactgggtatttttatctgggcatggccggatgggccaaaaagtatggtggaa
aagagccgattgttacaagaaatgggctttcctctaaccgcacactacagcgaacccgtc
atctccagtagtgatgttgcacagtggcgggatcgctggtttaaaatgccgctacctttt
gtgactgatggggtagtcatccgtcaagaaaatgtgcccgcggggcgctattggcaggca
acaccaggaaactggtctgtggcgtggaaatatccgcctccccagcaaataactgaaatc
aaagatatccattttacagtggggcgcactggcaaaatcacagctattttacaggttgta
ccggtaaaaattgatgataaatggattcgtcgagtgaatattggatcgattgcccgttgg
aggctatgggatatcgtacctggagatcaagttactatctcattagctgggcagggtatt
ccacgtttggataaggttatctggcgcgtgagtcagcggcaggagatcgtgccgccagac
gccgataaattccatcagttaacttgctttcgccgtttaccttttgagtgcgagcctcag
ttcttatctcgcttagcatggcttagtggtacaaacgggttagatatgcagagtgtgggc
aatgggctttggcgcgaacttatccatcatgggtttatcaatggtttactcgattggcta
tcactgtctgtagagcaaattgcggcggttccaggtattgggcaaggccgggcagaaaag
atttatcagcaatttcaacgagccagacaacagcctttttctcaatggttacaggctttg
ggattcccacaaggaatacctcttgattcttcatggcactctttacggcaacggggtatt
gccgaatggcgtttaatgccgggcattgggcaggttagagcaaaacagattaatcatttt
ttgcatcacccagaggtacagatgatggctgacttcttatcacagcagggaattgcggga
ttcagtcccgaagagtag
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