Yersinia enterocolitica WA: CH47_607
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Entry
CH47_607 CDS
T03643
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yew
Yersinia enterocolitica WA
Pathway
yew03030
DNA replication
yew03410
Base excision repair
yew03420
Nucleotide excision repair
yew03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH47_607 (ligA)
03410 Base excision repair
CH47_607 (ligA)
03420 Nucleotide excision repair
CH47_607 (ligA)
03430 Mismatch repair
CH47_607 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yew03032
]
CH47_607 (ligA)
03400 DNA repair and recombination proteins [BR:
yew03400
]
CH47_607 (ligA)
Enzymes [BR:
yew01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CH47_607 (ligA)
DNA replication proteins [BR:
yew03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CH47_607 (ligA)
DNA repair and recombination proteins [BR:
yew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CH47_607 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH47_607 (ligA)
MMR (mismatch excision repair)
DNA ligase
CH47_607 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CH47_607 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
TLE_N
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AJI83486
LinkDB
All DBs
Position
630747..632765
Genome browser
AA seq
672 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRADPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPLAG
FEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHI
QRLMQFKAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITFPEHCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAG
KLTGLDRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRA
ADIEALKSVPDVGEVVAKHVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVID
EAEMIRLLGESS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaataattcagcaaattaatcaactaagaacctcattgcgccatcacgaacat
ctgtaccatgtgttggatgcgccagagatccctgatgctgaatatgaccgcctgatgcag
caattgcgtgagctggaagcacaacatcctgaattgatcaccaatgattcaccgacccaa
cgagtgggcgctgcgccgcttgatgctttcgagcaggtaaaacacgaagtcccgatgctc
tctctcgataacgtatttgatgaagaaagctatctggcttttgacaaaagagtccatgac
cggttgaaacgtgccgatcctctgacattctgctgtgaattgaagcttgacggtttagcg
gtgagtttattgtacgaagatggcgagctggtcagagcggcaacacgtggtgatggcact
accggtgaaaatattaccgccaatgtccgcactatccgtgcaatcccgttgcgtttgcag
ggcgataatatccctcgacgagtcgaagttcgcggtgaggtttttatgccattggcgggt
ttcgagcagcttaacgatgaggctcgtcgcaaaggggggaaagttttcgccaacccacgt
aacgctgccgccggttcattgcgccaacttgacccacgtattacggctaaacggccatta
actttcttctgctatggcgtcggtttattggagggcggcgaacttccccgcagccatatt
cagcgcctgatgcaatttaaggcctggggcttaccggtcagtgagcgggtcaaattatgt
actggtagcgagcaagtgattgctttctatcgtcaagtcgaacaagaccgtggcggttta
ggttttgatattgatggggtggttatcaaagttgattcactcgacttacaggaacagctg
ggctttgtcgcgcgcgcacctcgctgggctacagcatttaaattcccggcacaagagcag
ataacgcaagttcgtgaagtggagtttcaggtggggcgtacgggcgcaattacgccagtt
gcgcggctggaaccggtgcaagtggccggtgtgattgtcagcaatgcaaccttgcataat
gccgatgaaattgagcgtttgggcttacgtatcggtgataccgtgattgtccgtcgcgcc
ggtgatgttattccgcaagtggtgggcgtggtgatggatcaacgcccgcaggatgccaaa
gagatcactttccctgagcactgcccggtgtgtggttctgatatcgagcgggttgagggg
gaagcggttgcccgttgcactggtgggttattctgtgccgcacaacgtaaagaggcactg
aagcattttgtctcgcgccgcgcgctggatgtcgatggcatgggcgacaagattatcgaa
caattggtagaaaaacagtatgttgagaacccagctgatttatttacgctgactgcgggc
aagctgacgggtcttgaccggatggggccgaagtcggctcaaaatctgattgtggcgctg
gaaaaggcaaaacagacgacttttgcccgcttcctctatgcgctgggcattcgcgaagta
ggtgaggcgacagcggctaatttggctgctcatttccgtaatctggaaaacctacgtgct
gctgatatcgaggcattaaaaagtgtgccggatgtcggggaagtggtggccaagcatgtg
gtgaacttccttggtgaagagcacaatcagaaagtgatcgaagcgctggaaaaagtgatc
acttggcccgagccgcagcaaattatagccgaagagatagatagcccattcgcgggtaaa
actgtggttctgaccggctcactgactatcctctcacgggacgaagccaaagatcgcctg
gccgctttgggggccaaagtcagtggcagtgtttccaaaaaaactgatctggtgattgcg
ggtgaagcggcgggatcgaaactggtgaaagcgcaggaactgggaattacagttatcgat
gaagcggaaatgatccgtttgctcggtgagtcgtcctaa
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