Yersinia enterocolitica subsp. palearctica Y11 (serotype 0 3): Y11_00781
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Entry
Y11_00781 CDS
T02010
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yey
Yersinia enterocolitica subsp. palearctica Y11 (serotype:0:3)
Pathway
yey03030
DNA replication
yey03410
Base excision repair
yey03420
Nucleotide excision repair
yey03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Y11_00781
03410 Base excision repair
Y11_00781
03420 Nucleotide excision repair
Y11_00781
03430 Mismatch repair
Y11_00781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yey03032
]
Y11_00781
03400 DNA repair and recombination proteins [BR:
yey03400
]
Y11_00781
Enzymes [BR:
yey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Y11_00781
DNA replication proteins [BR:
yey03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Y11_00781
DNA repair and recombination proteins [BR:
yey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Y11_00781
NER (nucleotide excision repair)
GGR (global genome repair) factors
Y11_00781
MMR (mismatch excision repair)
DNA ligase
Y11_00781
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Y11_00781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
TLE_N
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CBY28103
UniProt:
A0A0H3NXA0
LinkDB
All DBs
Position
69610..71628
Genome browser
AA seq
672 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRADPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPLAG
FEQLNNEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHI
QRLMQFRAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITFPEHCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAG
KLTGLDRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRA
ADIEALKSVPDVGEVVAKHVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVID
EAEMIRLLGESS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaataattcagcaaattaatcaactaagaacctcattgcgccatcacgaacat
ctgtaccatgtgttggatgcaccagagatccctgatgctgaatatgaccgcctgatgcag
caattgcgtgagctggaagcacaacatcctgaattgatcaccaatgattcaccgacccaa
cgagtgggtgctgcgccgcttgatgctttcgagcaggtaaaacacgaagtcccgatgctc
tctctcgataacgtatttgatgaagaaagctatctggcttttgacaaaagagtacatgac
cggttgaaacgtgccgaccctctgacattctgctgtgaattgaagcttgatggtttagcg
gtgagtttattgtacgaagatggcgagctggtcagagcggcaacacgtggtgatggcact
accggtgaaaatattaccgccaatgtacgcactatccgtgcaatcccgttgcgtttgcaa
ggtgataatatccctcgacgagtcgaagttcgcggtgaggtttttatgccattggcgggt
ttcgagcagcttaacaatgaggctcgtcgcaaaggggggaaagttttcgccaacccgcgt
aacgctgccgccggttcattgcgccaacttgacccacgtattacagctaaacggccatta
actttcttctgctatggcgtcggtttattggagggcggcgaacttccccgcagccatatt
cagcgcctgatgcaatttagggcctggggcttaccggtcagtgaccgggtcaaattatgt
actggtagcgagcaagtgattgctttctatcgtcaagtcgaacaagaccgtggcggttta
ggttttgatattgatggggtggttatcaaagttgattcactcgacttacaggaacaactg
ggctttgtcgcgcgcgcacctcgctgggctacagcatttaaattcccggcacaagagcag
ataacgcaagttcgtgaagtggagtttcaggtggggcgtacgggcgcaattacgccagtt
gcgcggctggaaccagtgcaagtggcaggtgtgattgtcagcaatgcaaccttgcataat
gccgatgaaattgagcgtttgggcttacgtatcggtgataccgtgattgtccgtcgcgcc
ggtgatgttattccgcaagtggtgggcgtggtgatggatcaacgcccgcaggatgccaaa
gagatcactttccctgagcactgcccggtgtgtggttctgatatcgagcgggttgaaggg
gaagcggttgcccgttgcactggtgggttattctgtgccgcacaacgtaaagaggcactg
aagcattttgtctcgcgccgggcgctggatgtcgatggcatgggtgacaagattatcgaa
caattagtagaaaaacagtatgttgagaacccagctgatttatttacgctgactgcgggc
aagctgacgggtcttgaccggatggggccgaagtcggctcaaaatctgattgtggcgcta
gaaaaggcaaaacagacgacttttgcccgcttcctctatgcgctgggcattcgcgaagtg
ggtgaggcaacagcggctaatttggctgctcatttccgtaatctggaaaacctacgtgct
gctgatatcgaggcattaaaaagtgtgccggatgtcggggaagtggtggccaagcacgtg
gtgaacttccttggtgaagagcacaatcagaaagtgatcgaagcgctggaaaaagtgatc
acttggcccgagccgcagcaaattatagccgaagagatagacagcccattcgcgggtaaa
acagtggttctgaccggctcactgactatcctctcacgggacgaagccaaagatcgcctg
gccgctttgggggccaaagtcagtggcagtgtttccaaaaaaactgatctggtgattgcg
ggtgaagcggcgggatcgaaactggcgaaagcgcaggaactgggaattacagttatcgat
gaagcggaaatgatccgtttgctcggtgagtcgtcctaa
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