Yersinia hibernica CFS1934: D5F51_00260 Help Entry D5F51_00260       CDS       T05961                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism yhi  Yersinia hibernica CFS1934 Pathway yhi03030   DNA replication yhi03410   Base excision repair yhi03420   Nucleotide excision repair yhi03430   Mismatch repair Brite KEGG Orthology (KO) [BR:yhi00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     D5F51_00260 (ligB)    03410 Base excision repair     D5F51_00260 (ligB)    03420 Nucleotide excision repair     D5F51_00260 (ligB)    03430 Mismatch repair     D5F51_00260 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:yhi03032]     D5F51_00260 (ligB)    03400 DNA repair and recombination proteins [BR:yhi03400]     D5F51_00260 (ligB) Enzymes [BR:yhi01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      D5F51_00260 (ligB) DNA replication proteins [BR:yhi03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      D5F51_00260 (ligB) DNA repair and recombination proteins [BR:yhi03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      D5F51_00260 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      D5F51_00260 (ligB)    MMR (mismatch excision repair)     DNA ligase      D5F51_00260 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       D5F51_00260 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_DNA_ligase DNA_ligase_aden HHH HHH_2 HHH_5 RNA_ligase Expansin_C Motif Other DBs NCBI-ProteinID:  QAX77148 UniProt:  A0ABX5QVQ9 LinkDB All DBs Position 59504..61198 Genome browser AA seq 564 aa AA seqDB search MCKKLKILSLLIVGFINWNANAGPICPEWPEERMSGEINLLEKQLRQWDVAYHQQGISPL SDDIYDQLQDKLHGWRSCHGLPDKTNNTLIPGNGKTPHPIAHTGLKKLKDETALIDWISR RKNLWVQPKIDGVAVTLVYQTGKLTQVLSRGNGVKGQNWTDKAPLISAIPQYIATAPPLL TLQGELFLQMEGHQQAKSGGVSARASVAGALMRKSTSPLLTKLGIFIWAWPDGPKDMVEK TRLLQEMGFPLTAYYSKPVTAASDVIYWRKLWFQTPLPFVTDGVVIRQEEEPAGRYWQAM PGNWSVAWKYRPPQQLTEIKDIHFTVGRTGKITTILQVTPVKIDDKWIRRVNIGSVSRWK KWNIIPGDQVIITLAGQGIPRLDEVIWRVSQRHKFTPPAVGTFHHLSCFSRLPVECEPQF LSRLVWLSGANGLDMQGVGSGLWRDLVHYGLINDLVGWLSLSVEQIAAVPGIGQGRAEKI YQQFQRTRQQPFSKWLQALGFPLAISVDSPWRSLQQKSSAEWRLISGVGPIRANQINHFL HHPEVQAMVDFLSLQGIAGFRPEE NT seq 1695 nt NT seq  +upstreamnt  +downstreamnt atgtgcaaaaaattgaaaatactaagcttgctgattgtcggttttatcaattggaatgct aacgcggggcctatttgccctgaatggccagaagaaagaatgtcgggcgaaattaatcta ttggaaaagcagctacgtcagtgggatgtagcttatcaccagcaaggtattagcccgctt tcagatgatatttacgaccaattgcaggataaattacatggatggcgatcatgccatggc ttacccgataaaacgaataacacactgataccgggtaacggaaagacacctcatcctatt gcccacactggattaaaaaaacttaaagatgaaactgcacttattgattggatatcaagg cggaaaaatctatgggtgcaacccaaaatagacggtgtggcggtcactctggtgtatcag accggaaaattgacccaagtgttaagccgaggtaatggtgtgaaaggccaaaattggacg gataaagcgccacttatttctgctattcctcaatatattgccactgccccgcctttgtta actctgcaaggagaattattcctacaaatggagggccaccaacaagcaaaatcaggaggt gttagtgccagagcatccgttgcaggtgccctgatgcgcaaatctacatctccactgcta accaagttgggtattttcatttgggcatggccagatgggccaaaagatatggttgagaaa accaggctattacaagaaatgggttttcctttgactgcttactacagtaagccagttact gcagctagcgatgttatttactggcgaaaactttggtttcaaacaccgctgccttttgtg acggatggtgttgttatccgccaagaggaagaacccgcagggcggtattggcaggcaatg ccgggaaactggtctgtagcgtggaaatatcggccaccgcagcagctcactgaaattaaa gatatccatttcacggttgggcgtaccgggaaaatcactactattttacaggttaccccg gtaaagattgatgataaatggatccgcagagtgaatattgggtctgtttcccgttggaaa aaatggaatatcatacccggtgaccaagtcattatcacattagctggtcagggtattcca cggctagatgaggttatttggcgagtgagtcagcggcataaatttaccccgcccgctgtg ggtacgtttcatcatctaagctgcttcagccgcttaccggttgagtgtgaaccccagttt ttatctcgcctagtgtggcttagtggggccaacggcctcgacatgcagggagtagggagc ggtttgtggcgagatcttgtccattatgggcttattaatgatttagtcggttggctctca ctgtctgttgagcaaattgcggcggttcctggtattgggcagggacgggcagaaaagatt tatcagcaatttcaacgcaccagacagcaacctttttctaaatggctgcaggctttggga ttcccgttagcaatatctgttgattctccatggcgctctttacagcaaaagagtagtgcc gagtggcgattaatatcgggtgttgggccgatacgtgcaaaccaaattaatcatttctta catcatccggaagtacaggctatggttgatttcttgtcactgcagggaattgcagggttt cggccggaagagtag

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