Yinghuangia sp. ASG 101: LO772_11645
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Entry
LO772_11645 CDS
T07749
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yia
Yinghuangia sp. ASG 101
Pathway
yia03030
DNA replication
yia03410
Base excision repair
yia03420
Nucleotide excision repair
yia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LO772_11645 (ligA)
03410 Base excision repair
LO772_11645 (ligA)
03420 Nucleotide excision repair
LO772_11645 (ligA)
03430 Mismatch repair
LO772_11645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yia03032
]
LO772_11645 (ligA)
03400 DNA repair and recombination proteins [BR:
yia03400
]
LO772_11645 (ligA)
Enzymes [BR:
yia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LO772_11645 (ligA)
DNA replication proteins [BR:
yia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LO772_11645 (ligA)
DNA repair and recombination proteins [BR:
yia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LO772_11645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LO772_11645 (ligA)
MMR (mismatch excision repair)
DNA ligase
LO772_11645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LO772_11645 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_TFIIB
UPF0758_N
HHH_3
DUF5788
zf-IS66
DUF8512
Motif
Other DBs
NCBI-ProteinID:
UGQ14185
LinkDB
All DBs
Position
complement(2814008..2816287)
Genome browser
AA seq
759 aa
AA seq
DB search
MADLTGAEGVPAEVRERAVDLAKELEEHRFRYYVKDAPTVSDAEFDALMRELDGIERRYP
ALRTPDSPTQTVGGEAAEDAVKVDHLERMLSLDNAMNEADLDEWVERLHRELAGAAFHFL
CELKVDGLAVNLLYENGELVRALTRGDGRTGEDITANVRTIGEIPHRLRDDGGHDVPGLV
EIRGEVFFPIEAFDDLNARRVEAGEKPFANPRNAAAGSLRMKDPQAVAQQPLHMVVHGIG
AREGFTIDCLSHAYEKLHAWGLPTARHNKVFASADEVKEFIRYFGEHRNSVEHEIDGVVI
KIDEIPLQGRLGATSKAPRWAIAFKYPPQEVNTKLLEIKVNVGRTGRVTPYAVMEPIKVA
GSTVAYATLHNQEVVKAKGVLIGDMVVLRKAGDVIPEILGPVADLRDGTEREFVMPSHCP
ECGTELRPMKEGDVDVRCPNARSCPAQLRERLFHLAGRKALDIDGLGYVAATALTQPLEP
AEPPLRDEGDLFALTLDQLLPIKVLVRDPKTGMPKVDDETGAHKTVTFFANQKGEPKKTV
DVLFDGLEKAKRQPLWRILTALSIRHVSDTTARAITSEFRDLDRLANASVEEIADVEGVG
PIIAQAVVEWFAEDWHREIVEKWRAAGVRFVEEGGAEKAPGTLTGLTTVVTGTLTGFTRD
GAKEALEERGAKVTGSVSKKTDFVVVGDSPGSKYDKAVSLGVPVLDDEGFAVLLADGPEA
ARAWVAARTGDTAEETGGAAEGAGGGDEPGETGVAADAE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtggctgatctgacaggcgccgaaggcgtccccgccgaggtgcgcgagcgggccgtggac
ctggccaaggagctggaggagcaccggttccgctactacgtcaaggacgcgccgaccgtc
agcgacgccgagttcgacgcgctcatgcgcgagctggacggcatcgagcggcgttatccg
gccttgcgcacacccgactccccgacgcagaccgtcggcggcgaggcggccgaggacgcg
gtcaaggtcgaccacctggagcgcatgctcagcctcgacaacgccatgaacgaggccgac
ctcgacgagtgggtcgagcggctgcatcgcgaactcgcgggtgccgccttccacttcctg
tgcgagctgaaggtcgacgggctcgcggtcaacctgctgtacgagaacggcgagctggtg
cgcgcgctgacccgcggcgacgggcggaccggcgaggacatcacggcgaacgtccggacg
atcggcgagatcccgcaccggctccgcgacgacggcggccacgacgtccccggactggtc
gagatccgcggcgaggtgttcttcccgatcgaggcgttcgacgatctcaacgcgcggcgt
gtggaggcgggggagaagccgttcgcgaatccgcgcaacgccgccgcggggtcgctgcgg
atgaaggatccgcaggcggtggcccaacagccgctgcacatggtcgtgcacggcatcggc
gcccgcgagggattcacgatcgactgcctgtcgcacgcgtacgagaagttgcacgcgtgg
ggcctgccgaccgcgcggcacaacaaggtcttcgcgtccgccgacgaggtcaaggagttc
atccgctacttcggcgagcaccgcaactccgtcgaacacgagatcgacggcgtcgtgatc
aagatcgacgagatcccgctgcagggccggctcggcgcgacgtccaaggcaccgcgctgg
gcgatcgcgttcaaatacccgccgcaggaggtcaacaccaagctcctggagatcaaggtc
aacgtcggccgcaccgggcgcgtcacgccgtacgccgtgatggagccgatcaaggtcgcg
gggtcgacggtggcgtacgcgacgctgcacaaccaggaggtcgtcaaggccaagggtgtg
ctgatcggcgacatggtcgtgctgcgcaaggccggcgacgtgatcccggagatcctgggc
ccggtcgccgacctgcgcgacggcaccgaacgcgagttcgtgatgccgtcgcactgcccc
gagtgcggtaccgagttgcggccgatgaaggagggcgacgtcgacgtacgctgcccgaac
gcgcgttcgtgccccgcgcagctccgcgaacgcctgttccacctcgcgggccgcaaggca
ctcgacatcgacggcctcgggtacgtcgcggcgaccgccctcacccagcccctggagccg
gccgagccgccgctgcgcgacgagggcgacctgttcgcgctgaccctcgaccagctgctg
ccgatcaaggtgctggtacgcgacccgaagaccggaatgccgaaggtcgacgacgagacc
ggcgcgcacaagaccgtgacgttcttcgcgaaccagaagggcgagcccaagaagaccgtc
gacgtgctgttcgacggtctggagaaggccaagcggcagccgctgtggcgtattttgacc
gcgttgtcgatccggcacgtcagcgatacgaccgcgcgcgcgatcacgagcgagttccgc
gacctggaccggctggcgaacgcgagcgtcgaggagatcgcggacgtcgagggcgtcggg
ccgatcatcgcgcaggcggtcgtcgagtggttcgccgaggactggcaccgcgagatcgtg
gagaagtggcgtgccgcgggcgtccgcttcgtcgaggagggcggtgcggagaaggccccc
ggcacgctcaccgggctcaccaccgtggtcaccgggacgctcaccggcttcacgcgcgac
ggcgccaaggaggcgctggaggagcggggagcgaaggtgaccgggtcggtctcgaagaag
accgacttcgtcgtcgtcggcgacagccccggatcgaagtacgacaaggccgtatcgctc
ggtgttccggtcctcgacgacgagggcttcgcggtgctgctggcggacgggccggaggcc
gcccgggcgtgggtggccgcgcggaccggagacacggcggaggaaacgggcggcgcggcg
gaaggcgccggaggcggcgacgaaccgggggagaccggagtggccgcggacgccgagtag
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integrated database retrieval system
