Yersinia intermedia: CH53_1829
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Entry
CH53_1829 CDS
T03608
Name
(GenBank) NAD-dependent DNA ligase adenylation domain protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yin
Yersinia intermedia
Pathway
yin03030
DNA replication
yin03410
Base excision repair
yin03420
Nucleotide excision repair
yin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH53_1829
03410 Base excision repair
CH53_1829
03420 Nucleotide excision repair
CH53_1829
03430 Mismatch repair
CH53_1829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yin03032
]
CH53_1829
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_1829
Enzymes [BR:
yin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CH53_1829
DNA replication proteins [BR:
yin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CH53_1829
DNA repair and recombination proteins [BR:
yin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CH53_1829
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH53_1829
MMR (mismatch excision repair)
DNA ligase
CH53_1829
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CH53_1829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH
DUF3701
HHH_5
HHH_2
RNA_ligase
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AJJ20886
LinkDB
All DBs
Position
2082139..2083824
Genome browser
AA seq
561 aa
AA seq
DB search
MNMRNLKIVILLIASFTHWAAGAGAACPEWPPERMSAEINTLKQQLDKWSVAYHQQGISL
IADDVYDQLQEKLALWQSCHRLPDNYGNTLIPGNGTFRHPVAHTGLKKLKNEAALANWMV
GRKSLWVQPKVDGVAVTLVYQDGKLIQLLSRGNGLKGQNWTDKAPFITAIPQYIATAPPW
LTLQGELFLQMGDHLQASSGGVNARAAVAGALMRKSPAALLPQLGIFIWAWPDGPSSMVE
KGELLQAMGFPLTAKYSKPIASSRDVAHFRHHWFHTALPFVTDGVVIRQAAEPAGRNWQA
VPGYWAVAWKYPAQQQITEIKDIHFTIGRTGRVTVVLLVSPVKIDDKWIRRVNVGSVSRW
RQWDITSGDQIIIALAGHGIPRLESVVWRVSQRQEFTPPAGDQFHQLSCFRLISPECEPQ
LLSRLIWLSGPKGLDIQSISSGYWRDLIHHGLINDLVGWLSLTRDQIAGVPGIGTARAEN
IYQQFQSTRQKPFSQWLQALGFAQGIVVNSPWRLLQQRSIAEWGLIPGIGPVRAKQITRF
LHHPEVQAMADFLSHQNIAGF
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgcggaatttaaaaatcgtcatactgttgatagccagttttacacattgggcc
gccggagcgggagctgcctgccctgaatggccgccagaaagaatgtctgctgaaattaat
actctcaaacaacaactggataagtggagtgtggcataccatcagcaaggtattagtctg
attgcagatgatgtttacgatcaattacaggagaaattagctctatggcagtcatgccat
cggttgccggataattacggaaacacgctaattcctggtaatgggacgtttcgtcatccg
gttgcccataccggactaaaaaagcttaaaaatgaagctgcattagcgaattggatggtg
gggcggaaaagtctctgggttcagccaaaagtggatggcgttgcagtaacactggtgtat
caggatggaaaactaatacaactgctcagtcgaggaaatggtttgaaaggccagaactgg
actgacaaagcgccatttattactgctattcctcaatatattgctaccgctcctccttgg
ttaacgctgcaaggggaactattcctgcaaatgggcgaccacttacaagcgtcgtctggc
ggtgtcaatgccagagcggcggttgcgggtgcacttatgcgcaagtctccagcggcatta
ctgcctcaattgggcatttttatatgggcatggcctgatgggccaagcagcatggtggag
aaaggggaactattgcaggcgatgggcttccccttgactgctaaatacagcaaaccaata
gcatcaagccgcgatgttgcacactttcgtcatcactggtttcacacagcgctgcctttt
gtaactgatggcgtggttatccgacaggcagcggaacctgctgggcgcaactggcaggcc
gttccaggatactgggccgtggcgtggaaataccccgcacaacagcaaattaccgaaatt
aaagatatacattttacgataggccgcaccggtagagtgaccgttgttttactggtttca
ccagtaaaaattgatgataaatggattcggcgagtgaatgtaggttcagtctctcgttgg
cggcaatgggatattacatctggcgatcaaattattatcgcattggctgggcatggcatt
ccacggctagagagtgttgtttggcgggtaagccaacggcaggaattcaccccaccggcg
ggagaccaattccatcaattgagttgttttcgccttatatctcctgagtgtgaaccacaa
cttctctctcgtttgatatggctcagtggccccaaagggctagatatacaaagtatcagt
agtggctattggcgagacctgatccatcatgggcttatcaatgatttggtggggtggcta
tcccttactagagaccaaatagcgggtgttcctggtatagggacagcacgtgctgaaaat
atttatcagcaatttcaaagcacaaggcaaaaacccttttcccaatggctacaggcgttg
gggtttgcgcagggtatagttgtcaattctccgtggcggctactacaacaacgcagtatt
gcagagtggggcttaataccgggtatagggccggttcgggcaaaacaaattacgcgtttt
ttacaccacccagaggtacaagctatggctgatttcctatcgcaccagaacattgcaggg
ttttag
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integrated database retrieval system
