Yersinia intermedia: CH53_200
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Entry
CH53_200 CDS
T03608
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yin03009
]
CH53_200 (rumA)
Enzymes [BR:
yin01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
CH53_200 (rumA)
Ribosome biogenesis [BR:
yin03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CH53_200 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Cons_hypoth95
Methyltransf_15
Methyltransf_12
Methyltransf_11
Methyltransf_4
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
AJJ17807
LinkDB
All DBs
Position
complement(244963..246093)
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AA seq
376 aa
AA seq
DB search
MHCAQYTAGSCRSCQWLDKPYPQQLADKQHHLESLLASHAVAQWLAPVFGRENAFRNKAK
MVVSGSVERPLLGMLHRDGTPVDLCDCPLYPASFAPVFAVLKTFIGRAGLTPYNVARKRG
ELKFLLLTESTYSGELMLRFVLRSETKLAQLRAALPWLQQQLPQLAVISANIQPVHMAIL
EGEQEVPLTEQQALPELFNQVPLFIRPQSFFQTNPQVAASLYATARQWVRQLGISSMWDL
FCGVGGFGLHCASAETQLTGIEISAEAIACARQSAQQLGLQNVSFAALDSTCFATAETQV
PQLVLVNPPRRGIGAELCDYLAQMAPEFILYSSCNAQTMAKDISLLADYRIERVQLFDMF
PHTAHYEVLVLLTLRP
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgcattgcgcacagtatacggcgggtagttgccgttcctgccagtggctggataaaccc
tatccacaacaactggctgacaaacaacatcatctggaaagtctgttagccagtcacgct
gtggctcagtggctagccccggttttcgggcgtgaaaacgcttttcgtaataaagcgaaa
atggtggtcagtggcagcgtcgagcggccactattggggatgttgcatcgtgacggtacc
ccggtcgatttatgtgattgcccactctatccggccagttttgcgccagtttttgccgtg
ttgaaaacatttattggccgtgccggtctcacaccctataacgtcgcacgcaaacgcggc
gagcttaaattcctgttattgaccgaaagtacgtatagcggtgagttaatgctgcgcttt
gtattgcgttctgaaaccaagctggcgcaattacgcgcagctctgccgtggttacagcag
caattgcctcaactggctgttatctcggctaatattcagccagtgcatatggcaatctta
gaaggggaacaagaagtcccgttgactgaacagcaggcgctgcccgaactgtttaatcag
gtgccgctgtttatccgcccacaaagttttttccagaccaatcctcaggttgccgcttca
ctgtatgccacggcacggcaatgggtgcggcagttaggtatcagcagtatgtgggatctg
ttctgcggcgtcggcggttttggtttgcattgtgccagcgccgagacgcaactcaccggt
atcgaaatcagcgcggaagctatcgcctgcgcacgccaatcggcccagcagttagggtta
cagaatgtcagttttgccgcactggattctacctgtttcgccaccgcagaaacgcaagtg
ccgcagttggtcttggttaacccaccacggcgcggtattggtgctgaactgtgtgactat
cttgctcagatggcgcctgaattcatactctattcaagctgtaatgcgcagacaatggca
aaagatatcagcctgttagccgattaccgtattgagcgggtgcagttgtttgatatgttt
ccgcatactgctcattacgaggtcctcgtattgcttaccctgcgtccttga
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