Yersinia intermedia: CH53_3929
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Entry
CH53_3929 CDS
T03608
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
yin
Yersinia intermedia
Pathway
yin03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CH53_3929 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_3929 (nth)
Enzymes [BR:
yin01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CH53_3929 (nth)
DNA repair and recombination proteins [BR:
yin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CH53_3929 (nth)
Prokaryotic type
CH53_3929 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
P_gingi_FimA
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AJJ19265
UniProt:
A0A0T9M3J4
LinkDB
All DBs
Position
complement(4361769..4362410)
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AA seq
213 aa
AA seq
DB search
MNKEKRVAILTRLRDNDPHPTTELVYTSPFELLISVLLSAQATDVSVNKATAKLYPVANT
PQALLDLGVDGLKSYIKTIGLFNTKAENVIKTCRILLEKHNGEVPEDRAALEALPGVGRK
TANVVLNTAFGWPTIAVDTHIFRVCNRTGFAPGSNVDQVEAKLLKVVPAEFKLDCHHWLI
LHGRYTCIARKPRCGSCIIEDLCEFKEKVYPEH
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagagaaacgtgtcgcaattctgactcggctgcgggacaacgatccgcacccc
acgactgaactggtctatacctcaccttttgaactgcttatttcggtgttgctctcggcg
caagccaccgatgtcagcgtcaataaagccaccgccaaactttatccggtggccaatact
ccgcaagccttgcttgatctgggtgttgatggtctgaagtcatacatcaaaactatcggt
ctgtttaatactaaagccgaaaatgtgattaaaacctgccgcattttgctggaaaagcac
aatggcgaggtgcctgaagacagagcggcgctcgaagcgctgcccggtgttggccgtaaa
acggcgaatgtggtgttgaacacggcttttggttggccaactatcgcggtagatacccat
atattccgcgtctgtaaccgcaccggctttgctcccggtagcaatgttgatcaggttgaa
gccaagttactcaaggtggttccggctgaatttaagcttgattgccatcactggctaatc
ctgcatggtcgctatacctgtattgcccgcaaaccgcgctgtggttcgtgcattattgaa
gatttgtgtgaatttaaagaaaaggtctacccggagcattaa
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