Yersinia kristensenii: HRD70_04705
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Entry
HRD70_04705 CDS
T08672
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yki
Yersinia kristensenii
Pathway
yki03030
DNA replication
yki03410
Base excision repair
yki03420
Nucleotide excision repair
yki03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HRD70_04705 (ligB)
03410 Base excision repair
HRD70_04705 (ligB)
03420 Nucleotide excision repair
HRD70_04705 (ligB)
03430 Mismatch repair
HRD70_04705 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yki03032
]
HRD70_04705 (ligB)
03400 DNA repair and recombination proteins [BR:
yki03400
]
HRD70_04705 (ligB)
Enzymes [BR:
yki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HRD70_04705 (ligB)
DNA replication proteins [BR:
yki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HRD70_04705 (ligB)
DNA repair and recombination proteins [BR:
yki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HRD70_04705 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HRD70_04705 (ligB)
MMR (mismatch excision repair)
DNA ligase
HRD70_04705 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HRD70_04705 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH
HHH_5
DUF3701
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QKJ14545
LinkDB
All DBs
Position
1093013..1094707
Genome browser
AA seq
564 aa
AA seq
DB search
MHKKLKILILLIVGFINGGARAESVCTKWSEERMSGEINLLEKRLFLWDVAYHQQGISLL
PDNVYDQLQDKLHGWRSCHGLPDKKNSTLIASNGKSPHPVAHTGLKKLKDETALIDWMAG
RKNLWVQPKIDGVAVTLVYQAGNLTQILSRGNGLKGQDWTDKAPFISAIPQYIAAAPPLL
TLQGELFLQMEGHQQAQSGGVNARASVAGALMRKSATPLLAKLGIFIWAWPDGPKGMREK
TELLKEMGFPLTAYYSESVFSSRDVAHWRKLWFEMPLPFVTDGVVIRQDDEPAGRYWHAT
PGNWSVAWKYPPPQQITEIKDIHFTVGRTGKVTAILQVAPVKIDDKWIRRVNVGSIARWK
QWDIVPGDQVTITLAGLGIPRLDNVVWRVSQRDEITPPAANKFHQLSCFRLLSVECKPQF
LSRLAWLSGANGLDMQNVGSGLWRELVHHGLINSLVDWLSLSIEQIAAVPGIGQVRAEKI
YLQFQLARQQPFPQWLQALGFPQAIPIDSQWYSLQQRSITEWRLISGIGAVRAKQINHFL
HHPEIQMMADFLSQQGITGFRPEE
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaaaaattgaaaatactaatcctacttattgttggttttataaatgggggggcc
agagcggagtctgtgtgcactaaatggtcagaagaaagaatgtcaggcgaaattaatctt
ctggagaagcggctctttctgtgggatgtggcatatcaccagcaaggtattagcctactt
cctgataatgtttacgatcaattgcaggacaaattgcatgggtggcgatcatgccatggg
ctcccggataagaagaatagtacgttgatagccagtaacgggaagagtcctcatcctgtt
gctcacaccggcttaaaaaagcttaaagatgaaactgcacttattgattggatggcgggg
cggaaaaatctctgggtacaacctaaaatagatggcgttgcggtcacactggtgtatcag
gctggaaacttaactcaaattctgagccggggaaatggcttgaaaggtcaggactggacg
gataaagcaccgtttatttctgctattcctcaatatattgccgcagcacctcctttgtta
actctacagggagaattgttcttacagatggaggggcaccaacaagcgcagtcgggaggt
gtcaatgctcgagcttctgttgcaggtgcactgatgcgcaaatctgcaaccccattgctg
gccaaactgggtatttttatttgggcatggccggatgggccaaaaggtatgagggaaaaa
accgaattattaaaagaaatgggttttcctttaactgcttattacagcgaatctgtcttt
tccagtcgcgatgttgctcactggcgaaagctctggtttgaaatgccgctaccttttgtg
actgatggcgtggttatccgtcaagacgatgaacccgcagggcgctattggcacgcaaca
ccaggaaactggtctgtggcatggaaatatccacctccccagcaaataactgaaatcaaa
gatatccattttacagttggtcgtaccggtaaagttaccgctattttacaggttgctccg
gtaaaaattgatgacaaatggattcgtcgagtaaatgttgggtctattgcccgttggaaa
cagtgggatatcgtgccgggtgaccaagtcactatcacattggctgggctgggtattcca
cgattggataatgttgtctggcgagtaagtcagcgggacgaaattaccccaccggccgca
aataagttccatcaattaagttgctttcgtcttttatctgttgagtgcaaacctcaattt
ttgtctcgcttagcatggcttagtggcgctaacgggttagatatgcagaatgtgggaagt
gggctttggcgagagcttgtccatcatgggcttattaatagcctggtcgattggttatca
ctgtctatagagcagattgcggcagttcctggtattgggcaagttcgagcagaaaaaatt
tatctgcaatttcaactcgccaggcaacagccttttcctcaatggttacaggctttggga
ttcccacaggcaatacctattgattctcagtggtactctttacagcaacggagtattacc
gaatggcgcttaatatcaggtattggggcggtgcgagcaaaacaaattaatcatttttta
catcatccagaaatccaaatgatggctgatttcttatcgcaacagggtattacagggttt
cggcccgaagagtaa
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