Yersinia rochesterensis: CH54_2583
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Entry
CH54_2583 CDS
T03609
Name
(GenBank) NAD-dependent DNA ligase adenylation domain protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ykr
Yersinia rochesterensis
Pathway
ykr03030
DNA replication
ykr03410
Base excision repair
ykr03420
Nucleotide excision repair
ykr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH54_2583
03410 Base excision repair
CH54_2583
03420 Nucleotide excision repair
CH54_2583
03430 Mismatch repair
CH54_2583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ykr03032
]
CH54_2583
03400 DNA repair and recombination proteins [BR:
ykr03400
]
CH54_2583
Enzymes [BR:
ykr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CH54_2583
DNA replication proteins [BR:
ykr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CH54_2583
DNA repair and recombination proteins [BR:
ykr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CH54_2583
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH54_2583
MMR (mismatch excision repair)
DNA ligase
CH54_2583
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CH54_2583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH_5
HHH
DUF3701
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJJ35869
UniProt:
A0ABN4FEC0
LinkDB
All DBs
Position
2816961..2818655
Genome browser
AA seq
564 aa
AA seq
DB search
MRKKLKILSLLILGFINWGARAESVCPEWSEERMSGEIDLLAKQLFQWDLAYHQQGISLL
SDNIYDQLQDKLHGWRLCHGLPDTKNSTLIAGNGKSPHPVAHTGLKKLKDETALIDWMAG
RKNLWVQPKIDGVAVTLVYQSGNLTQILSRGNGLKGQDWTDKAPLISAIPQYITAAPPSL
TLQGELFLQMEGHQQVQSGGVNARASVAGALMRKSTTPFLTKLGIFIWAWPDGPKSMKEK
TALLKKMGFPLTAYYSEPVFSSSDVAHWRKLWFQMPLPFVTDGVVIRQEDEPAGRHWHAT
PGNWSVAWKYPPPQQITEIKDIHFTVGRTGKVTAILQVAPVKIDDKWIRRVNIGSIARWK
QWDIVPGDQVTITLAGQGIPRLDNVIWRVSQRHEITPPAANKFHQLSCFHLLPLECKPQF
LSRLAWLSGANGLDMQGVGSGLWRELVHHGLINSLVDWLSLSVEQIAAVPGIGQGRAEKI
YLQFQRARQQPFPQWLQALGFPQAIPIDSQWHSLQQWSIAEWRLISGIGAVRAKQINHFL
HHPEIQTMADFLSQQGITGFRPEE
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaaaaattgaaaatactaagcctactgattcttggttttataaattggggggcc
agagcggagtctgtgtgccctgaatggtcagaagaaagaatgtcaggcgaaattgatctt
ttggcgaagcagctctttcagtgggatttggcatatcaccagcaaggtattagcctgctt
tctgataatatttacgatcaattgcaggacaaactgcatgggtggcgattatgtcatggg
ctaccggatacgaagaatagcacgttgatagcgggtaacgggaagagtcctcatcctgtt
gctcacaccggcttaaaaaagcttaaagatgaaactgcacttattgactggatggcgggg
cggaagaatctctgggtgcagcccaaaatagatggcgttgcggtcacactggtttatcag
tcaggaaacctgactcaaattttgagtcgaggaaatggcttgaaaggtcaggactggacg
gataaagcaccgcttatttctgctattcctcaatatattaccgcagcgcccccttcgtta
actctacagggggaattattcttacaaatggaggggcatcaacaagtgcagtcgggaggt
gtcaatgcccgagcttctgttgcaggtgcactgatgcgcaagtctacaactccattcctg
accaaattgggtatttttatttgggcatggccggatgggccaaaaagtatgaaggaaaaa
actgcattattaaaaaaaatgggatttcctttaactgcttattacagcgaacccgtcttt
tccagtagcgatgttgctcattggcgaaagctctggtttcaaatgccgctaccttttgtg
actgatggcgtggttatccgtcaagaagatgagccagcagggcgtcattggcatgcaaca
ccaggaaactggtctgtagcatggaaatatccacctccccagcaaataactgaaataaaa
gatatccattttaccgttggtcgcactggtaaagttaccgctattttacaggtagctccg
gtaaaaattgatgacaaatggattcgtcgagtaaatattggatctattgcccgctggaaa
cagtgggatattgtgccgggtgatcaagtcactatcacattggctgggcagggtattcca
cgattggataatgttatctggcgagtaagccagcggcacgaaatcaccccgcctgctgca
aataagttccatcagttaagttgttttcaccttttacctcttgagtgcaaaccccagttt
ctatctcgcttagcatggcttagtggtgctaacgggttagatatgcagggtgtgggaagt
gggctctggcgagaacttgtccaccatgggcttattaatagcttggtcgattggttgtca
ctgtctgtagagcagattgcggccgttcctggtattgggcaaggtcgagcagagaagatt
tatctgcaatttcaacgcgccagacaacagccttttcctcaatggttacaggctttggga
ttcccgcaggcaatacctattgattctcagtggcactctttacaacaatggagtattgcc
gaatggcgcttgatatcaggtattggggcagtgcgggcaaaacaaattaatcatttttta
catcacccagaaatccaaacgatggctgatttcttatcgcaacagggaattacagggttt
cggcccgaagagtaa
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