Yersinia massiliensis: DA391_06460
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Entry
DA391_06460 CDS
T05402
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yma
Yersinia massiliensis
Pathway
yma03030
DNA replication
yma03410
Base excision repair
yma03420
Nucleotide excision repair
yma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DA391_06460 (ligA)
03410 Base excision repair
DA391_06460 (ligA)
03420 Nucleotide excision repair
DA391_06460 (ligA)
03430 Mismatch repair
DA391_06460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yma03032
]
DA391_06460 (ligA)
03400 DNA repair and recombination proteins [BR:
yma03400
]
DA391_06460 (ligA)
Enzymes [BR:
yma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DA391_06460 (ligA)
DNA replication proteins [BR:
yma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DA391_06460 (ligA)
DNA repair and recombination proteins [BR:
yma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DA391_06460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DA391_06460 (ligA)
MMR (mismatch excision repair)
DNA ligase
DA391_06460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DA391_06460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
DUF4796_N
TLE_N
RUBY_RBDX
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AVX37327
UniProt:
A0A2R4NMH5
LinkDB
All DBs
Position
1415387..1417405
Genome browser
AA seq
672 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLETQHPELITLDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAEPLTFCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPQRVEVRGEVFMPQAG
FEQLNEDARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLTFFCYGVGLLEGGELPRSHI
QRLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLEQRPQDAKEITFPEQCPVCGSEIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFELTAG
KLTGLDRMGPKSAQNLIVSLEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRA
ADIDALKSVPDVGEVVAKHVLNFLSEEHNQKVIEALEKVISWPEPQQIVAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVID
EAEMIRLLGESS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcattcagcaaattaatcaactaagaacttcattgcgccatcacgaacac
caataccatgtgttggatgcccccgagatccctgatgctgaatatgaccgtctcatgcag
caattgcgtgatttggaaactcagcaccctgagttgattacccttgattcaccgacgcag
cgtgtaggggcggcacctcttgatgcgtttgagcaggttaagcacgaagtcccgatgctt
tctctcgataatgtgtttgatgaagagagctatctcgcctttgataagcgagtccatgat
cgcctgaaacgcgcagaaccactgacgttttgctgtgaattgaagttagatggtctggcg
gtcagtttactgtatgaaaatggtgagttggttagagccgcaacccgtggtgatgggacg
acgggtgaaaacattaccgccaacgtacgcactattcgagccattccgctgcgcttgcaa
ggtgacaatatcccgcagcgagttgaagtgcgcggtgaagtttttatgccgcaagcgggc
tttgaacaacttaatgaagatgcgcgtcgcaaaggcggcaaagtgtttgccaatccacgt
aatgccgctgcgggctccttgcgtcagcttgatccccgtattactgccaagcgccggtta
acgttcttctgttatggcgtgggtttgttggaaggtggcgaacttcctcgcagccatatt
cagcgcttaatgcagtttaaagcttggggcttgcccgtcagtgaccgcgtaaaactgtgt
actggcagtgagcaggtgattgccttctatcgtcaggtagaacaagaccgtgcgagctta
ggctttgatattgacggtgtcgtcatcaaagttgacgatcttgatctgcaggagcaactc
ggttttgtggctcgtgctccgcgttgggcgaccgcctttaagttccccgcccaggagcag
ataacccaagttcgcgaagtggagtttcaggtcgggcgcacgggggcgattacccccgta
gcacgccttgagccagtacaagtggccggtgtgatggtgagtaatgcgacgctgcataac
gccgatgagattgagcgccttggcttgcgtattggcgatacagtcattgtgcgccgcgcg
ggtgatgtgatcccgcaagtggtaggcgtcgtattggaacaacgcccacaagatgccaaa
gagatcactttccctgagcagtgccctgtgtgtggttcagagattgaacgtgttgaaggc
gaggcggtcgctcgctgtaccggcggtttgttctgcgccgcacagcgcaaagaagcgtta
aagcattttgtttcccgcagggcgctggatgtcgatggcatgggcgataagattatcgag
caattggttgagaaacagtacgttgagaatcccgctgacttattcgagctgacggcaggt
aaactcaccggtctggatcggatggggccaaaatctgcgcaaaatttgattgtctcgcta
gagaaggcaaaacagacgacgtttgcgcgtttcctgtatgccctcggtattcgtgaggta
ggcgaggcgacagccgcgaatttggccgcacatttccgtaatctagagaatctacgtgcc
gctgatatcgacgcattaaaaagcgtgccagacgtgggtgaagtggtcgcgaagcatgtg
ctgaatttcctcagcgaagagcacaatcagaaagtgattgaagcgttggaaaaggtgatt
agttggccagaaccgcaacagattgtcgccgaagagatagatagcccattcgccggtaaa
accgtggtcttgaccggttcgttgacgatcctctcccgtgatgaagcgaaagatcgcctg
acggctttaggggctaaagtgagtggtagtgtttccaagaaaaccgatttggtcatcgcg
ggtgaagctgcaggttcgaaactggtcaaagcgcaggaacttggcattaccgtcatcgat
gaagcagaaatgatccgtttgctaggtgagtcgtcctaa
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