Yersinia mollaretii: HRD69_19130
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Entry
HRD69_19130 CDS
T06716
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ymo
Yersinia mollaretii
Pathway
ymo03030
DNA replication
ymo03410
Base excision repair
ymo03420
Nucleotide excision repair
ymo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ymo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HRD69_19130 (ligA)
03410 Base excision repair
HRD69_19130 (ligA)
03420 Nucleotide excision repair
HRD69_19130 (ligA)
03430 Mismatch repair
HRD69_19130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ymo03032
]
HRD69_19130 (ligA)
03400 DNA repair and recombination proteins [BR:
ymo03400
]
HRD69_19130 (ligA)
Enzymes [BR:
ymo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HRD69_19130 (ligA)
DNA replication proteins [BR:
ymo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HRD69_19130 (ligA)
DNA repair and recombination proteins [BR:
ymo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HRD69_19130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HRD69_19130 (ligA)
MMR (mismatch excision repair)
DNA ligase
HRD69_19130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HRD69_19130 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
TLE_N
DZR_2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QKJ04925
LinkDB
All DBs
Position
complement(4297046..4299058)
Genome browser
AA seq
670 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITSDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAEPLTFCCELKLDGLA
VSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPQAG
FEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGELPRSHI
QRLMQFKAWGLPVSHRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAQEILFPEHCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKIIEQLVEKQYVENPADLFELTAG
KLTGLDRMGPKSAQNLIVALDKAKQTTFARFLYALGIREVGEATAANLAAHFRNMANLRA
ADIDALKSVPDVGEVVAKHVLNFLSEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVID
EAEMIRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataattcagcaaattaatcaactaagaacctcattgcgccatcacgaacat
cagtaccatgtgttagatgccccagagatccctgatgctgaatatgatcgtctgatgcag
caattgcgcgatttggaagcacaacatcccgaattgatcaccagtgactcaccgacacag
cgggtgggggctgcacctctcgatgcatttgagcaggttaaacatgaagtcccgatgctc
tctctcgataacgtctttgatgaagagagctatttggcttttgataaacgggtacatgat
cgcctgaaacgcgcggaaccgctgactttctgctgtgaactgaagttagatggtctggcg
gtcagtttactgtatgaagagggcgaattggtcagagcggcaacccgtggtgacggaacg
acgggtgagaatattaccgcgaatgtgcgtactattcgtgctattccactgcgcttacag
ggggataacatcccacggcgggttgaagtgcgtggtgaagtctttatgccgcaagcgggt
tttgagcaactgaatgacgaggcgcgccgcaaaggtggcaaagttttcgccaacccccga
aatgctgctgctggatcgttgcgccagctcgatccccgcatcacggccaaacggcgattg
gccttcttctgttatggcgtgggtttgctagatggcggcgagcttccccgcagccatatc
caacgcctgatgcaatttaaagcttggggcttaccggtcagtcatcgcgtgaagctctgc
accggcagcgagcaggtgattgctttctatcgacaggttgaacaagaccgcgcaagttta
ggtttcgatattgatggggtagtcatcaaggttgatgatctagacttacaagagcagtta
ggctttgtggcgcgcgcgcctcgctgggcgactgcgttcaaatttcccgctcaagaacag
ataactcaagtccgtgaagtggagtttcaggtggggcgcacgggggctatcacgccagtt
gcccgccttgagccggtgcaagtggcgggtgtgattgtcagcaatgcgacactgcataat
gccgatgaaattgaacgccttggcttacgtatcggcgataccgtcattgtgcgccgtgcg
ggtgatgtgatcccgcaagtggtgggtgtggtgatggaacaacgcccgcaagatgcgcaa
gagatcctcttcccagagcactgcccggtgtgtggttctgatattgaacgggtggaagga
gaggcggttgctcgttgtaccggtggcctgttctgtgctgcgcaacgtaaagaggcactc
aagcactttgtttcccgccgggcgctggatgtggagggaatgggcgataaaattatcgag
caactggtggaaaaacagtatgtcgagaatcctgctgacttgttcgaactgacggcaggt
aaactgaccgggctggatcggatggggccgaagtctgcacaaaatctgattgtggcatta
gataaagcaaaacagactacatttgcgcgcttcctgtatgccttgggtatccgcgaagtg
ggcgaggcgacggcggctaatttggcagcgcacttccgtaatatggccaatttacgtgcg
gctgatatcgacgcactcaaaagtgtgccagatgtgggtgaggtggtggctaaacacgtg
ctgaacttcctcagtgaggagcacaatcagaaagtgatcgaggcgctggagaaggtgatc
agttggccggagccgcagcagattattgctgaagagatcgacagcccgtttgcgggtaaa
acggtcgtcttgacgggctcattgacaatcctttcgcgggacgaggcgaaagatcgtctg
accgccctaggggcaaaagtgagcggcagtgtctccaagaaaacggatctggtgatagcc
ggtgaggctgcgggttcaaaattggtcaaagcgcaggaactggggatcaccgtcattgat
gaagcagaaatgatccgtctgctgggtgaatag
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integrated database retrieval system
