Yersinia pseudotuberculosis PB1/+ (serotype 1B): YPTS_0039
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Entry
YPTS_0039 CDS
T00744
Name
(GenBank) NAD-dependent DNA ligase adenylation
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypb
Yersinia pseudotuberculosis PB1/+ (serotype 1B)
Pathway
ypb03030
DNA replication
ypb03410
Base excision repair
ypb03420
Nucleotide excision repair
ypb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPTS_0039
03410 Base excision repair
YPTS_0039
03420 Nucleotide excision repair
YPTS_0039
03430 Mismatch repair
YPTS_0039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypb03032
]
YPTS_0039
03400 DNA repair and recombination proteins [BR:
ypb03400
]
YPTS_0039
Enzymes [BR:
ypb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YPTS_0039
DNA replication proteins [BR:
ypb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YPTS_0039
DNA repair and recombination proteins [BR:
ypb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YPTS_0039
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPTS_0039
MMR (mismatch excision repair)
DNA ligase
YPTS_0039
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YPTS_0039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
DUF3701
HHH_5
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACC87038
UniProt:
B2JYM4
LinkDB
All DBs
Position
45752..47455
Genome browser
AA seq
567 aa
AA seq
DB search
MNILNLKIIMFLLISNIIVVGGAWATSTCPDWPATRIAVEINALEQQLNKWSAAYHQQGH
SPVTDDIYDQLQDKLRVWQSCRGLPDKTESQPIPGKGQFLHPVAHTGLKKLKDETALTRW
MAGRKNLWVQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANAP
ALLTLQGELFLLMDGHQQAKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTM
KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQFWFQAPLPFVTDGVVVRQEEEPAGRYW
QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNIGSVT
RWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAPNWDKFHQLSCFQRLPHGCE
PQFLSRLIWLSGPGGLDIGGIGGGFWQKLIHHELINDLVGWLLLTPEQIASIPGIGNARA
EKIYQQFQRAKQQPFSRWLLALGFPQVVSVDAQWQVVLRRSLSEWATMAGIGQMRAKQIK
HFLDHPDVQALADFLSTQKVVGFELTE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactgaatctaaagataataatgttcctattaatatctaacatcatagtggtg
ggcggtgcttgggctacatcaacatgccctgattggcctgcaaccagaatagcggttgag
attaacgcgttggagcaacagttgaataagtggtcggccgcttaccatcagcaaggtcat
agcccggtcacggatgacatttatgatcaattacaggacaaattacgtgtgtggcaatcc
tgtagggggttacctgataagacggaaagccagccgatccccggcaaagggcaatttctt
caccccgttgcccataccgggttaaaaaaactcaaagatgaaaccgccctcacgaggtgg
atggcggggcggaaaaatctctgggtacaacccaaggtcgacggtgtggcagtgacactg
gtttatcacggggggaaattggtgcaacttcttagccgaggaaatggagtaaaaggtcaa
aactggacagaaaaagcgccatttatttctgctattccccaatatattgcaaatgcgcct
gcactattaacgttgcaaggggagttgtttctactgatggatggccaccagcaagcaaaa
tcgggtggggtgaatgccagatcaacggtggcaggtgcactgatgcgcaaatctccgtct
ccgctattagctcaagttggggtctttatttgggcatggcctgatggcccaacaaccatg
aaagagaaggtggcactattacaggtaatgggttttccttttacagctaaatacagcgag
cccgtcatgtcgcatcttgatgttgtgcaatggcgtcagttctggtttcaagcaccactg
ccgtttgtcaccgatggtgttgtggtcaggcaagaggaggagccagccggtcgttattgg
caggcaacaccggggcagtggtctatggcgtggaagtatccgcctttgcaacacattgcc
gaagtaaaagatattcattttacccttggacgaacgggtaaaggcacggtggtattagag
gttttaccgataaaaattgatgataaatggattcgtcgagtgaatattggttcggtcacc
cgttggaaacaatgggacatcgctcctggtgatcacattacattggcacttgccgggcat
ggtatccctcggctagataacgttgtctggcgagtacaccaacggaatactattacggca
cccaattgggataaattccatcagctcagttgctttcaacgcttaccacatggctgtgaa
cctcagtttttatcccgcttgatatggcttagtggcccaggggggctagatattggcggc
atcggtggcggcttttggcaaaagcttattcaccatgagttaattaatgatttggtcgga
tggttattactaacaccagagcaaattgcaagtatccctggaattggaaatgcgcgggct
gaaaaaatttatcaacagtttcaacgggcaaagcagcaacccttttctcgttggttgctg
gcattggggttcccgcaggttgtttccgttgacgcgcagtggcaggttgtattgcgccgg
agtctatctgaatgggccaccatggccgggattgggcaaatgagagcaaaacaaattaag
cattttttggatcaccccgacgtacaagcactggctgatttcttatctactcagaaagtt
gttgggttcgagctcacagagtaa
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