Yersinia pestis Angola: YpAngola_A2744
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Entry
YpAngola_A2744 CDS
T00635
Symbol
ligA1
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypg
Yersinia pestis Angola
Pathway
ypg03030
DNA replication
ypg03410
Base excision repair
ypg03420
Nucleotide excision repair
ypg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YpAngola_A2744 (ligA1)
03410 Base excision repair
YpAngola_A2744 (ligA1)
03420 Nucleotide excision repair
YpAngola_A2744 (ligA1)
03430 Mismatch repair
YpAngola_A2744 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypg03032
]
YpAngola_A2744 (ligA1)
03400 DNA repair and recombination proteins [BR:
ypg03400
]
YpAngola_A2744 (ligA1)
Enzymes [BR:
ypg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YpAngola_A2744 (ligA1)
DNA replication proteins [BR:
ypg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YpAngola_A2744 (ligA1)
DNA repair and recombination proteins [BR:
ypg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YpAngola_A2744 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YpAngola_A2744 (ligA1)
MMR (mismatch excision repair)
DNA ligase
YpAngola_A2744 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YpAngola_A2744 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
DNA_pol_lambd_f
RNA_ligase
DUF4796_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABX87435
UniProt:
A9QZH0
LinkDB
All DBs
Position
complement(2867967..2869979)
Genome browser
AA seq
670 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAG
FEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHI
QCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAG
KLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRA
ADIETLKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVID
EAEMIRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaattaatcaactaagaacttcattgcgccatcatgaacat
caataccatgtgctggatgcccccgaaatccctgatgctgaatacgaccgtatgatgcaa
caactgcgtgatttagaagcacaacatcctgaactggtgactaatgactcaccgacgcaa
cgggttggtgccgcgcctcttgatgcctttgaacaggtgaagcacgaagtaccgatgctg
tctcttgataatgtgtttgatgaagaaagttatctggccttcgataaacgggtacatgac
cggcttaaaacggcagaaccactgacattttgttgtgaactgaagctagatggtctggcg
gtcagtttattgtatgaaaatggtgaattggtgagagccgcgacacgtggtgatggcact
acgggagaaaatattaccgctaatgtgcgtactattcgtgccattccactgcgcctacat
ggggataatgtcccgcggcgcgtagaagtccgtggcgaggtttttatgccacaagccggt
tttgaacagcttaacgaagaggctcgtcgcaaaggagggaaggtctttgccaacccacgg
aatgcggcggcgggatcgttacgccaacttgatccccgtattacagccaaacggccactc
accttcttctgctatggtgtcggtctgctggatggcggcgagctaccccgtagccatatt
cagtgtctgatgcaatttaaggcatgggggttacccgtgagtgagcgggtgaaactctgc
actggcagtgatcaggttattgctttttatcgtcaaatagagcaagaccgcgcaggcttg
ggctttgatattgatggtgtggtgatcaaagttgatgatcttgctttgcaggagcaattg
gggtttgttgcgcgtgcccctcgctgggcgacggcatttaaattcccggcgcaggaacag
atcacacaggtccgtgaagtggaatttcaagtgggtcgtaccggtgccattactcccgta
gcccgtctggagccggttcaggtggctggcgtgattgtcagtaatgcgacattgcacaat
gccgatgaaatcgaacgccttggtttgcgtattggcgatacggtcattgtgcgccgtgcg
ggtgatgtgatcccacaagttgttggtgtggtcatggaacaacgccctgatgatacgaag
gagatcactttcccaagccaatgcccagtgtgtggctccgatattgaacgggtggaaggg
gaggctgttgcccgctgcactggcggcttgttctgtgctgcacagcgtaaagaggcactt
aaacattttgtctcccggcgagcactggatgtagacggtatgggcgataaaattatcgaa
caactggtcgagaaacagtatgttgaaaatccagctgatttattccaactgaccgcaggt
aagttgacggggttagatcggatggggccaaagtctgcgcaaaatctgattgcggcgctg
gagaaggccaaacagaccacctttgcacgcttcttgtatgccttggggatccgcgaagtg
ggcgaagcgacggccgcaaatttagccgctcacttccgcactctggataatctgcgtgca
gcagatattgagacgttaaaaagtgtgccggatgtcggcgaggtggtggctaaacatgtg
atgaacttcctcagtgaggaacataatcagaaagtcatcgaagaactggagaaagtggtc
agttggcctgagccgcagcaaattgtagtcgaggagagcgatagccccttcgctggaaaa
acggtggtcctgacggggtcattgacgatcctttcacgggatgaagcgaaagaccgcctg
acagcattaggcgcaaaagtgagtggcagtgtctctaaaaaaacgcatctggtgatcgct
ggcgaggcggctggttctaaactggcgaaagcgcaggaactcggaattaaagttattgat
gaagctgaaatgatccgtttgctgggtgaataa
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