Yersinia pestis Harbin 35 (biovar Medievalis): YPC_1065
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Entry
YPC_1065 CDS
T01874
Symbol
ygdE
Name
(GenBank) putative SAM-dependent methyltransferase
KO
K06968
23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:
2.1.1.186
]
Organism
yph
Yersinia pestis Harbin 35 (biovar Medievalis)
Brite
KEGG Orthology (KO) [BR:
yph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yph03009
]
YPC_1065 (ygdE)
Enzymes [BR:
yph01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.186 23S rRNA (cytidine2498-2'-O)-methyltransferase
YPC_1065 (ygdE)
Ribosome biogenesis [BR:
yph03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
YPC_1065 (ygdE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RLMM_N
RlmM_FDX
FtsJ
Spt5-NGN
Motif
Other DBs
NCBI-ProteinID:
ADV97734
LinkDB
All DBs
Position
1072046..1073152
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AA seq
368 aa
AA seq
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MNNKIALYCRSGFEKECAAEITEKAAQLEIFGFARVKENSGYVLFECYQLEDADRLIREI
PFREFIFARQMMVVGELLKDLPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKF
CRKLTVPLRSALREQKILSARENAHRPVVHVFFIAPGCCYVGYSYSNNNSPFYMGIPRLK
FPSDAPSRSTLKLEEAFHVFIPADEWEERLASGMHAVDLGACPGGWTYQLVQRSMMIQAV
DNGLMAQSLMDTGQVTHHRADGFKYEPTRSNIYWLVCDMVEKPTKVTQLITKWLVNGWCR
EAIFNLKLPMKKRYEEVVQNLAMMDEQLKENGINADIHAKQLYHDREEVTVHVRRIWSGA
PGRRDERY
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaattgctttatattgccgctccggctttgagaaagagtgtgcggcagaa
ataacagagaaggctgcacagctcgaaatctttggttttgcacgggtaaaagaaaacagt
ggctatgtattgtttgaatgctaccagttagaggatgcggatcgactcatccgtgaaata
ccgttccgcgagtttattttcgcccgccaaatgatggtggtgggggagttattgaaagac
ttacccccagaagaccgtgtgtcaccgatcgtgggaatgttggttggcgttattgaaaaa
gctggcgagttacgtgttgaggtggccgacaccaatgaaagcaaagagttactcaaattt
tgccgtaagctgacggtacctttgcgtagtgctttgcgtgaacagaaaattctgtccgct
cgtgagaatgcacatcggccagtggtgcatgtgttctttattgcgccgggttgttgttat
gttggttattcttacagcaataataactctccattctatatggggatccctcgacttaaa
ttcccctccgatgcaccaagtcgctcaaccttaaaactggaagaggcattccatgtattt
atccccgcggatgaatgggaggagcgtttagccagtggtatgcatgctgtcgatttaggc
gcttgtcccggtggctggacttatcaattagttcaacgcagcatgatgatacaagcggtt
gataatggtttgatggcacaaagcctgatggatacggggcaggtcacacatcaccgtgct
gatggttttaagtatgagcctacacgcagcaatatttattggttagtgtgtgacatggtg
gaaaaaccaacaaaagtcacgcagcttatcaccaaatggctagtcaatggttggtgccgt
gaagcgatcttcaacctgaaattaccaatgaaaaagcgttatgaagaagttgtacaaaat
ttagcaatgatggatgagcagttgaaagaaaacggtattaatgctgatatccatgccaaa
cagctctaccatgatcgcgaagaagttacggtgcatgtccgtcgtatctggtcgggtgca
ccgggccgccgtgatgagcgttattag
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