KEGG   Yoonia phaeophyticola: AABB29_13085
Entry
AABB29_13085      CDS       T10493                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
yphy  Yoonia phaeophyticola
Pathway
yphy03030  DNA replication
yphy03410  Base excision repair
yphy03420  Nucleotide excision repair
yphy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:yphy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AABB29_13085 (ligA)
   03410 Base excision repair
    AABB29_13085 (ligA)
   03420 Nucleotide excision repair
    AABB29_13085 (ligA)
   03430 Mismatch repair
    AABB29_13085 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yphy03032]
    AABB29_13085 (ligA)
   03400 DNA repair and recombination proteins [BR:yphy03400]
    AABB29_13085 (ligA)
Enzymes [BR:yphy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AABB29_13085 (ligA)
DNA replication proteins [BR:yphy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AABB29_13085 (ligA)
DNA repair and recombination proteins [BR:yphy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AABB29_13085 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AABB29_13085 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AABB29_13085 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AABB29_13085 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia
Other DBs
NCBI-ProteinID: WZC47825
LinkDB
Position
3162907..3165075
AA seq 722 aa
MTETARALEEEAPVFDRALADIPVDALTEDQASAELARLADMILRANTAYHRDDAPEIAD
ADYDALKSRNLAIEAAFPDLKRSDSPSEQVGGAIAEGFGKVTHAVRMLSLGNAFADDDVT
EFDDRVRRYLGLDAKAPLAYTAEPKIDGLSLSLRYENGHLVQAATRGDGSVGENVTANAR
TITDIPQYIPDAPNVLEIRGEVYMSHADFAALNERQAANGGKKFANPRNAAAGSLRQLDA
SITQSRPLKFFAYAWGALSAPLADRQSRAIERMASFGFSTNPLTATCEGPNALITHYRKI
EAKRATLGYDIDGVVYKVDDLEMQRRLGFRSTTPRWAIAHKFPAELAWTTLEAIDIQVGR
TGALSPVARLAPVTVGGVVVSNATLHNEDYIAGYGGDGQPIREGRDIRVGDWVQIYRAGD
VIPKIKDVDLARRPADAMAFVFPTQCPECQSDAIREDGDAVRRCTGGMICPAQAVEKLKH
FVSRAAFDIEGLGAKQVEQFYNDGWIATPADIFTLRARFGEGMQQLKNREGWGEKSASNL
FDAIDEKRTIALNRLIYSLGIRHVGDSSATLLANHYGSWAAFEEAMTSAEIGSGPAWDAL
IGIDGVGAVMAASVITTLQQEAERASIDRLVAHLQIEDAVAASTDSPVAGKTVVFTGSLE
RMTRAEAKARAESLGAKVSGSVSAKTDILVAGPGAGSKATKAAELGVATMDEDAWLALIG
DA
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgacagaaacggcgcgtgcactggaagaagaagcgccggtttttgaccgggctttggcc
gacattcctgttgatgcgttgaccgaagatcaggccagcgcagagcttgcacgcctggcc
gacatgatcttgcgcgcgaacacggcttatcaccgcgacgatgcccctgagattgcagat
gctgactacgatgcgctgaagtctcggaacctagcgattgaggccgcttttcctgatctc
aagaggtctgatagcccctcagagcaagttggcggcgcaattgccgaaggttttggcaag
gtgacacatgcggtccggatgctgtcgcttggcaatgcgttcgcagatgacgacgttacg
gagtttgatgaccgagttcgcagatatctgggattggatgccaaggccccgcttgcctac
acggcagagccgaagatcgatggtctgtctttgtcattgcgatacgaaaacggccacctt
gtgcaagcggccacgcggggcgatggcagtgtcggggaaaatgttacggcgaacgcccgc
acaatcaccgatattccgcaatatattccagatgcgccaaacgttttagagatacgcggc
gaggtatacatgagccacgccgactttgcggcgctgaatgaacggcaagcggcaaatggc
ggcaagaaatttgccaatccgcgcaacgccgctgccggatcattacgacaacttgacgca
tcgattacgcaatcgcggccgttaaaatttttcgcctatgcttggggcgcattatcggca
cccttggccgataggcaatcgcgcgccatcgaacggatggccagctttggattttcgaca
aacccactgacggcgacttgcgaagggcctaatgcgttgatcacccattaccgcaagatc
gaagcaaagcgcgccactttgggctacgatattgatggggtggtctataaggtcgacgat
cttgaaatgcagcggcgtctgggtttccgttcaacgacgccgcgttgggcgattgcgcat
aaattccccgccgaactggcatggacaacgctggaagccattgacattcaggtggggcgg
acgggggctttgtcgccagtggcccgattggcgcccgtgacagtgggcggcgttgtggtg
tcgaacgcgaccttacataatgaggactatatcgctggatatggcggggatgggcagccc
attcgcgagggccgtgatattcgggttggtgactgggttcagatttaccgggcgggtgat
gtcatccccaagatcaaagatgttgacttggcccgccgacccgctgacgcaatggccttt
gtttttccaacccaatgccctgaatgccagtccgatgcgatccgcgaggatggcgatgct
gtccggcgttgcacaggcggtatgatttgccccgcgcaagcggttgaaaagctaaagcat
ttcgtctcgcgtgcagcctttgatatcgaaggccttggcgccaaacaggtcgaacagttt
tacaatgatggctggatcgcgacccctgcagatatctttacgctgcgcgcccggttcggt
gaaggtatgcagcagctgaaaaaccgcgaaggctggggtgagaaaagcgcaagtaacctt
tttgatgcgattgatgaaaagcggacgattgcgctgaaccggctgatttactcgctcggg
atccgacatgtgggcgacagttcggccacgttattggccaatcattacggctcatgggcg
gcctttgaagaggccatgaccagcgccgaaatcggatcggggcccgcatgggacgcgttg
attggcattgatggggttggcgcggtgatggccgcctcggtcatcacgacgctgcaacaa
gaggctgagcgtgcctcgatcgatcgcttggttgcgcatttgcagatcgaagatgcggtc
gcggccagcaccgacagccctgttgcgggcaaaaccgtcgtgtttaccggcagtttagag
cggatgacgcgagccgaagcaaaggcgcgcgccgaaagcctgggcgcgaaagtttcaggc
tcggtcagcgcaaagacagatattttggtggcagggcccggtgccggatcaaaggcgaca
aaggcggcagaactgggcgttgccaccatggatgaagatgcctggcttgctctgatcggc
gacgcatga

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