Yersinia pseudotuberculosis IP 31758 (serotype O 1b): YpsIP31758_1321
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Entry
YpsIP31758_1321 CDS
T00570
Symbol
ligA1
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypi
Yersinia pseudotuberculosis IP 31758 (serotype O:1b)
Pathway
ypi03030
DNA replication
ypi03410
Base excision repair
ypi03420
Nucleotide excision repair
ypi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YpsIP31758_1321 (ligA1)
03410 Base excision repair
YpsIP31758_1321 (ligA1)
03420 Nucleotide excision repair
YpsIP31758_1321 (ligA1)
03430 Mismatch repair
YpsIP31758_1321 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypi03032
]
YpsIP31758_1321 (ligA1)
03400 DNA repair and recombination proteins [BR:
ypi03400
]
YpsIP31758_1321 (ligA1)
Enzymes [BR:
ypi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YpsIP31758_1321 (ligA1)
DNA replication proteins [BR:
ypi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YpsIP31758_1321 (ligA1)
DNA repair and recombination proteins [BR:
ypi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YpsIP31758_1321 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YpsIP31758_1321 (ligA1)
MMR (mismatch excision repair)
DNA ligase
YpsIP31758_1321 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YpsIP31758_1321 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DNA_pol_lambd_f
RNA_ligase
DUF4796_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABS47160
UniProt:
A7FGC2
LinkDB
All DBs
Position
1547356..1549368
Genome browser
AA seq
670 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQ
RVGAAPLDAFEQVEHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAG
FEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHI
QCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLVLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAG
KLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRA
ADIETLKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVID
EAEMIRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaattaatcaactaagaacttcattgcgccatcatgaacat
caataccatgtgctggatgcccccgaaatccctgatgctgaatacgaccgtatgatgcaa
caactgcgtgatttagaagcacaacatcctgaactggtgactaatgactcaccgacgcaa
cgggttggtgccgcgcctcttgatgcctttgaacaggtggagcacgaagtaccgatgctg
tctcttgataatgtgtttgatgaagaaagttatctggccttcgataaacgggtacatgac
cggcttaaaacggcagaaccactgacattttgttgtgaactgaagctagatggtctggcg
gtcagtttattgtatgaaaatggtgaattggtgagagccgcgacacgtggtgatggcact
acgggagaaaatattaccgctaatgtgcgtactattcgtgccattccactgcgcctacat
ggggataatgtcccgcggcgcgtagaagtccgtggcgaggtttttatgccacaagccggt
tttgaacagcttaacgaagaggctcgtcgcaaaggagggaaggtctttgccaacccacgg
aatgcggcggcgggatcgttacgccaacttgatccccgtattacagccaaacggccactc
accttcttctgctatggtgtcggtctgctggatggcggcgagctaccccgtagccatatt
cagtgtctgatgcaatttaaggcatgggggttacccgtgagtgagcgggtgaaactctgc
actggcagtgatcaggttattgctttttatcgtcaaatagagcaagaccgcgcaggcttg
ggctttgatattgatggtgtggtgatcaaagttgatgatcttgttttgcaggagcaattg
gggtttgttgcgcgagccccacgctgggcaacggcatttaaattcccggcgcaggaacag
atcacacaggtccgtgaagtggaatttcaagtgggtcgtaccggtgccattactcccgta
gcccgtctggagccggttcaggtggctggcgtgattgtcagtaatgcgacattgcataat
gccgatgaaatcgaacgccttggtttgcgtattggcgatacggtcattgtgcgccgtgcg
ggtgatgtgatcccacaagttgttggtgtggtcatggaacaacgccctgatgatacgaag
gagatcactttcccaagccaatgcccagtgtgtggctccgatattgaacgggtggaaggg
gaggctgttgcccgctgcactggcggcttgttctgtgctgcacagcgtaaagaggcactt
aaacattttgtctcccggcgagcactggatgtagacggtatgggcgataaaattatcgaa
caactggtcgagaaacagtatgttgaaaatccagctgatttattccaactgaccgcaggt
aagttgacggggttagatcggatggggccaaagtctgcgcaaaatctgattgcggcgctg
gagaaggccaaacagaccacctttgcacgcttcttgtatgccttggggatccgcgaagtg
ggcgaagcgacggccgcaaatttagccgctcacttccgcactctggataatctgcgtgca
gcagatattgagacgttaaaaagtgtgccggatgtcggcgaggtggtggctaaacatgtg
atgaatttcctcagtgaggaacataatcagaaagtcatcgaagaactggagaaagtggtc
agttggcctgagccgcagcaaattgtagtcgaggagatcgatagccccttcgctggaaaa
acggtggtcctgacggggtcattgacgatcctttcacgggatgaagcgaaagaccgcctg
acagcattaggcgcaaaagtgagtggcagtgtctctaaaaaaacgcatctggtgatcgct
ggcgaggcggctggttctaaactggcgaaagcgcaggaactcggaattaaagttattgat
gaagctgaaatgatccgtttgctgggtgaataa
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integrated database retrieval system
