Yersinia pestis KIM10+ (biovar Mediaevalis): y1492
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Entry
y1492 CDS
T00092
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk03030
DNA replication
ypk03410
Base excision repair
ypk03420
Nucleotide excision repair
ypk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
y1492 (lig)
03410 Base excision repair
y1492 (lig)
03420 Nucleotide excision repair
y1492 (lig)
03430 Mismatch repair
y1492 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypk03032
]
y1492 (lig)
03400 DNA repair and recombination proteins [BR:
ypk03400
]
y1492 (lig)
Enzymes [BR:
ypk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
y1492 (lig)
DNA replication proteins [BR:
ypk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
y1492 (lig)
DNA repair and recombination proteins [BR:
ypk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
y1492 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
y1492 (lig)
MMR (mismatch excision repair)
DNA ligase
y1492 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
y1492 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
DNA_pol_lambd_f
RNA_ligase
DUF4796_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AAM85063
UniProt:
Q7CJF3
LinkDB
All DBs
Position
1654957..1656969
Genome browser
AA seq
670 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAG
FEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHI
QCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAG
KLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRA
ADIETLKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVID
EAEMIRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaattaatcaactaagaacttcattgcgccatcatgaacat
caataccatgtgctggatgcccccgaaatccctgatgctgaatacgaccgtatgatgcaa
caactgcgtgatttagaagcacaacatcctgaactggtgactaatgactcaccgacgcaa
cgggttggtgccgcgcctcttgatgcctttgaacaggtgaagcacgaagtaccgatgctg
tctcttgataatgtgtttgatgaagaaagttatctggccttcgataaacgggtacatgac
cggcttaaaacggcagaaccactgacattttgttgtgaactgaagctagatggtctggcg
gtcagtttattgtatgaaaatggtgaattggtgagagccgcgacacgtggtgatggcact
acgggagaaaatattaccgctaatgtgcgtactattcgtgccattccactgcgcctacat
ggggataatgtcccgcggcgcgtagaagtccgtggcgaggtttttatgccacaagccggt
tttgaacagcttaacgaagaggctcgtcgcaaaggagggaaggtctttgccaacccacgg
aatgcggcggcgggatcgttacgccaacttgatccccgtattacagccaaacggccactc
accttcttctgctatggtgtcggtctgctggatggcggcgagctaccccgtagccatatt
cagtgtctgatgcaatttaaggcatgggggttacccgtgagtgagcgggtgaaactctgc
actggcagtgatcaggttattgctttttatcgtcaaatagagcaagaccgcgcaggcttg
ggctttgatattgatggtgtggtgatcaaagttgatgatcttgctttgcaggagcaattg
gggtttgttgcgcgtgcccctcgctgggcgacggcatttaaattcccggcgcaggaacag
atcacacaggtccgtgaagtggaatttcaagtgggtcgtaccggtgccattactcccgta
gcccgtctggagccggttcaggtggctggcgtgattgtcagtaatgcgacattgcacaat
gccgatgaaatcgaacgccttggtttgcgtattggcgatacggtcattgtgcgccgtgcg
ggtgatgtgatcccacaagttgttggtgtggtcatggaacaacgccctgatgatacgaag
gagatcactttcccaagccaatgcccagtgtgtggctccgatattgaacgggtggaaggg
gaggctgttgcccgctgcactggcggcttgttctgtgctgcacagcgtaaagaggcactt
aaacattttgtctcccggcgagcactggatgtagacggtatgggcgataaaattatcgaa
caactggtcgagaaacagtatgttgaaaatccagctgatttattccaactgaccgcaggt
aagttgacggggttagatcggatggggccaaagtctgcgcaaaatctgattgcggcgctg
gagaaggccaaacagaccacctttgcacgcttcttgtatgccttggggatccgcgaagtg
ggcgaagcgacggccgcaaatttagccgctcacttccgcactctggataatctgcgtgca
gcagatattgagacgttaaaaagtgtgccggatgtcggcgaggtggtggctaaacatgtg
atgaacttcctcagtgaggaacataatcagaaagtcatcgaagaactggagaaagtggtc
agttggcctgagccgcagcaaattgtagtcgaggagagcgatagccccttcgctggaaaa
acggtggtcctgacggggtcattgacgatcctttcacgggatgaagcgaaagaccgcctg
acagcattaggcgcaaaagtgagtggcagtgtctctaaaaaaacgcatctggtgatcgct
ggcgaggcggctggttctaaactggcgaaagcgcaggaactcggaattaaagttattgat
gaagctgaaatgatccgtttgctgggtgaataa
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integrated database retrieval system
