Yersinia pestis Nepal516 (biovar Antiqua): YPN_0123
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Entry
YPN_0123 CDS
T00370
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ypn
Yersinia pestis Nepal516 (biovar Antiqua)
Pathway
ypn03420
Nucleotide excision repair
ypn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YPN_0123
03430 Mismatch repair
YPN_0123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypn03400
]
YPN_0123
Enzymes [BR:
ypn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YPN_0123
DNA repair and recombination proteins [BR:
ypn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPN_0123
MMR (mismatch excision repair)
Other MMR factors
YPN_0123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
YccJ
PhoH
DUF4391
Motif
Other DBs
NCBI-ProteinID:
ABG16456
UniProt:
A0A0H2YE59
LinkDB
All DBs
Position
161500..163662
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AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQRDAVAAPRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISV
TFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQL
RLLKRLVKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGER
SNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTSIILAAANALIANN
DGRMGKNLWTDGAEGEPISLYCAFNELDEARFVVNRIKAWQDNGGALNDCAILYRSNAQS
RVLEEALLQTATPYRIYGGQRFFDRQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRFVELIDSLARETADMPLHVQ
TDRVIRDSGLWSMYEQEKGEKGQARIENLEELVTATRQYSYQDEDQDLMPLQAFLSHAAL
EAGDGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGLTRAMQKLTLCYAESRRLYGKEVNHRPSRFIGELPQECVEEVRLRASVSRPVNHRRMG
TPMHENDSGFSLGQRVRHPKFGEGTIVNLEGSGEHNRLQVAFPGEGIKWLVAAYARLEPV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgacagcctgaatgaaaaacaacgtgacgccgtggccgcg
ccgcgcggcaacttgttggtactggccggtgcaggcagtggcaaaacgcgggtgctggtt
caccgtatcgcctggctgttgtcggtagagaatgcctcgccgtattcgattatctcggta
acctttaccaataaagcggcggctgaaatgcgccaccgtattgaacatctgattggcacc
agccaaggcgggatgtggatcgggactttccacggtttggcgcaccgtctgctacgtgct
caccatctggatgccaatctgccacaagattttcaaatcctggatagcgatgaccaactg
cggttattgaaacgcctggtcaaagcactcaatttggatgagaaacaatggcccccgcgt
caggcgatgtggtacatcaacggcaaaaaagacgaagggctgcgcccgcaacatattgag
agctacggtaatccggttgaggccacctggctacgtatctatcaggcttatcaggaagcg
tgcgaccgcgcgggtctggttgattttgccgagctgttgctacgagcgcacgagctgtgg
ctgaacaaaccacatattcttaatcattatcgtgaacgctttaccaacattttggtggat
gagtttcaggataccaacaacatccaatatgcctggatccgcttgttggccggtgaacgt
tccaatgtgatgatcgtcggcgacgatgaccagtcaatctatggttggcgcggcgcgcag
gtcgagaatatccaacgtttcttgaaggatttccccggtgcggagaccatccgcctggag
cagaattaccgctcgaccagcatcattctggctgccgccaatgccctgattgccaacaat
gacggccgcatgggtaaaaatctgtggaccgatggcgcggagggcgaacctatctccctc
tattgtgcgtttaacgagttagatgaagcccgttttgtggtcaatcgtatcaaagcctgg
caggacaacggcggtgcgctgaatgattgtgccattttgtaccgtagcaacgcccaatcg
cgcgtattagaagaagcgttactgcaaacggcaaccccgtaccgtatttatggggggcag
cgcttcttcgaccgccaggaaattaaagactcactggcttatctgcgcctgatctccaat
cgtaatgacgacgccgcgtttgaacgggtggtgaatacacccactcgggggattggcgat
cgcacattggatgtggtgcgtcaaaccgcccgtgaccgccagttaacgctatggcaatca
acccgtgccatgttgcaggaaaaagtgctggcagggcgtgccgcgtccgcattacaacgc
tttgtcgagctgatcgattcactggcgcgcgaaacggctgatatgccgctacacgtgcaa
actgatcgcgttattcgtgattctggcttgtggtcgatgtacgaacaggaaaaaggcgag
aaaggtcaggcacgtatcgagaaccttgaagagctggttacggcgacccgtcaatacagc
tatcaggatgaagatcaggatctgatgccgctacaggccttcttatcccatgcggcactg
gaagccggagatggccaggccgatgcctatcaggatgcggtgcaattaatgactctccat
tcagcgaaaggcttggagtttccacaggtatttattgtgggaatggaagaagggatgttc
ccgagccaaatgtcattggatgagggggggcgtttggaagaggagcggcgtttggcctac
gtggggttaacccgtgcgatgcagaaactgacgttatgttacgccgaaagccgccgccta
tacggtaaagaggtcaatcaccgcccttcacgctttatcggcgaactgccgcaggagtgc
gtcgaagaggtccggctgcgcgccagtgtttcccgcccggtgaatcaccgccgaatgggg
actccgatgcacgagaatgacagcggtttctcattgggccagcgagtgcggcaccctaaa
tttggcgagggtactattgtgaatttggaaggcagtggtgagcacaaccggttgcaggtt
gccttccccggagaggggattaagtggctggtcgcggcctatgcgcgtctggaacccgtg
taa
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