Yersinia pestis Nepal516 (biovar Antiqua): YPN_0597
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Entry
YPN_0597 CDS
T00370
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ypn
Yersinia pestis Nepal516 (biovar Antiqua)
Pathway
ypn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPN_0597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypn03019
]
YPN_0597
03016 Transfer RNA biogenesis [BR:
ypn03016
]
YPN_0597
Enzymes [BR:
ypn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
YPN_0597
Messenger RNA biogenesis [BR:
ypn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YPN_0597
Transfer RNA biogenesis [BR:
ypn03016
]
Prokaryotic type
tRNA degradation factors
YPN_0597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
UPF0181
aRib
Spt6_S1
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ABG16929
UniProt:
Q1CM51
LinkDB
All DBs
Position
706447..708642
Genome browser
AA seq
731 aa
AA seq
DB search
MQCEGISNRWIRSSIRSGTAKHKGTILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVS
MDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRL
IDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIVALIGASAVLSLSGIPFNGPIGAARV
GFINDQYVLNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQV
VIENINALVAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIK
ADVTEALLAQDDTLDAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGIL
PRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVG
SPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAG
VPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGI
TREIMQVALNQAKGARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGS
VIRALTDETGTTIEIEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVD
FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATT
PDAEAPEAAAE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgtgaaggtatcagtaacaggtggattagatcgtcaatacgatcaggcaccgca
aagcataagggtacaattttgctgactccgattattcgtaaattccagtatggtcaacat
accgtaactatcgaaactggtatgatggctcgccaggccactgcagccgtaatggtaagc
atggacgacactgcagtattcgtgactgttgttggtcaaaagaaagccaaaccaggccag
agtttcttccctctgacggttaactatcaggagcgtacttacgctgctggccgtatccca
ggtagcttcttccgtcgtgaaggccgcccaagtgaaggcgaaacactgacttcacgtctg
atcgaccgcccaattcgcccactgttcccagacagcttcctgaacgaagttcaagtgatt
gcaaccgtcgtttcggttaacccacaaattaacccagacatcgtggcactgattggtgca
tctgcggtactgagcttgtcaggcattccatttaacggcccaatcggtgctgctcgcgtt
ggttttatcaacgaccagtatgtgctgaacccaaccactgacgagctgaaagagagccgt
ttggatctggttgttgccggtactgcgggtgcagtgctgatggttgaatcagaagccgat
attctgtccgaagagcaaatgttgggcgcggtcgtcttcggccacgaacaacagcaagtt
gtgattgaaaatattaacgctttggttgctgaagctggcaaacctaagtgggattggcag
gcagagcctgtcaacgaagcactgcatgcgcgtgttgctgaactggccgaagcgcgtctg
ggcgatgcataccgtatcactgaaaaacaagaacgttatacgcaagttgatgctatcaaa
gctgacgtgaccgaagcgctattagcgcaggacgacacattagatgccgctgaaattcag
gatatcctggccagcgttgagaaaaatgttgtgcgtagccgtgtgctgcgtggtgagcca
cgtatcgatggtcgcgaaaaagacatgatccgtggtttggatgtacgtactggcatcttg
ccacgtactcatggttctgccttgttcacccgcggtgaaactcaggcgttggttaccgct
acgctgggtacggcacgtgacgcacaaaacattgatgagttgatgggtgagcgcacagat
tcattcctgttacactataatttccctccgtattgtgtaggcgaaacagggatggttggc
tcacctaagcgtcgtgagattggccatggccgccttgcgaaacgtggtgttctggctgtg
atgccaagtgcgagcgagttcccttacactattcgtgtggtttctgaaatcaccgagtct
aatggttcttcctcaatggcttctgtttgtggtgcttctctggctctgatggatgcgggc
gtgccaattaaagccgctgttgctggtattgcaatgggcctggtaaaagagggtgataac
tttgtcgttctgtctgacattctgggtgacgaagatcacttgggcgacatggactttaaa
gtagccggtagccgtgacggtgtgaccgcactgcaaatggacattaaaattgaaggtatt
acccgcgaaattatgcaggtagctctgaatcaggctaagggtgcacgtttgcacattctg
ggcgtgatggaacaggctatcagcacaccacgtggcgatatctctgagtttgctccacgt
atctacaccatgaagatcaaccctgagaaaatcaaggatgtgatcggtaaaggtggttcg
gtgatccgtgcgctgactgatgaaactggcaccacgattgaaatcgaagatgatggtacc
attaagattgcagcaactgatggcgataaagcaaaacacgctatccgtcgtatcgaagag
attactgctgaaatcgaagtgggccgtatttacgcaggtaaagtcacccgtatcgttgat
ttcggtgcatttgttgctatcggtggcggtaaagaaggtctggtacatatttctcaaatc
gctgataagcgtgtagagaaagtgacagactacctgcagatgggtcaagatgtgccagtt
aaagtaatggaagttgatcgtcagggccgtatccgcctgagcatcaaagaagccactact
cctgacgcagaagcaccagaagcagcagcagagtaa
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