Yersinia pestis Nepal516 (biovar Antiqua): YPN_2422
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Entry
YPN_2422 CDS
T00370
Name
(GenBank) Exodeoxyribonuclease I subunit C
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ypn
Yersinia pestis Nepal516 (biovar Antiqua)
Pathway
ypn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
YPN_2422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypn03400
]
YPN_2422
Enzymes [BR:
ypn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
YPN_2422
DNA repair and recombination proteins [BR:
ypn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
YPN_2422
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YPN_2422
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YPN_2422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
YkoP
Motif
Other DBs
NCBI-ProteinID:
ABG18750
UniProt:
A0A0H2YJR7
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All DBs
Position
2709605..2711035
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AA seq
476 aa
AA seq
DB search
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP
EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAH
DAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARG
NTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKL
VHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVT
DDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLN
DSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLTLLKALFEYAKGLVS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaaaataagcaaccaacattttacgtccacgattatgaaaccttcggccag
cggccagccttggatagacctgcgcaatttgccggggtacgtaccgatctggatttcaat
ctcgtcgaagagccattggtcatttactgcaagcccgcagatgattatctgccacagccc
gaagcggtgatgataaccggtattaccccccaacatgctttagccaacggggtcaatgaa
gctgagttttcccgccaaatacaccaggccttttcggtacccggcacctgtatcctcggc
tacaacaatattcgttttgatgatgaagtcagtcgcaacattttctatcgtaatttttat
gatccttatgcctacagttggcaggggggaaattcccgttgggatctgttggatgtgatg
cgcgcctgctatgccctgcgcccagaaggtattgtttggcccgaaaatgatgatggcctg
cccagctttaaactggaacatttgaccaaagccaatggcgtcgaacatttacaggcacat
gatgcgatgtccgatgtctacgccaccattgcaatggcaaaattggtgaaacaggcccaa
ccccgtctgtttgattatctgtatcagcaccgcagtaagcataagatcaatgcgttgatt
gatatcgcggagatgacaccactggttcatgtgtctggcatgtttggtgccgcacggggc
aacaccagttgggtggcaccgctggcctggcaccccgagaataaaaatgcggtaattatg
tgtgatctggccggggatatgtccccattactggagttggacagcgatacattgcgcgaa
cgtctgtatacccgccgtgacaagctccaagcccaagagtcggcaatccctatcaaactg
gtacatatcaataaatgtccggtattggctcccgcgaaaaccctgctgcccgagaatgct
gatcgcttggggattgatcgccagcgttgtttgcaaaatctacaactgctgcggcaaaac
ccacaggtgcgtgaaaaagtggtcgcgctgtttgcacaagctgagccattcgcggttacc
gatgatgtggatacacagttgtataacggctttttcagtgatgctgatcgcgccaccata
aagattatccagcaaactgagtcacaaaatctgccagcactggatttgacatttcaggac
ccacggttggaggccctgttattccgcttccgcgcccgtaactacccgaataccttgaat
gacagtgaacaacagcgttggttacagcatcgccgtgaagcgcttagccctgaacgggta
caagattatgttttgcaactggaacaattttataaccagtatgaagacgataaagagaaa
cttacgctgctaaaagcgttgtttgaatatgccaagggattagtgagttaa
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