Yersinia pestis Nepal516 (biovar Antiqua): YPN_2814
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Entry
YPN_2814 CDS
T00370
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ypn
Yersinia pestis Nepal516 (biovar Antiqua)
Pathway
ypn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPN_2814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypn03019
]
YPN_2814
Enzymes [BR:
ypn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YPN_2814
Messenger RNA biogenesis [BR:
ypn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YPN_2814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABG19141
UniProt:
A0A0H2YJI9
LinkDB
All DBs
Position
complement(3168240..3169595)
Genome browser
AA seq
451 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRNSRPRSQADGQRRPAGPSSRGRSRNPGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacgccaattcaacgtcaggcaatccctgtagtactggaaggccgcgat
ttgatggccagtgcgcaaacgggtacgggtaaaaccgctggtttcaccttgccgctattg
caactgcttagccaagatcaacaacccattaagggccgccgtccggtacgagcattgatt
ttgacgccaacccgtgagctggccgcgcagattgacgaaaacgtacagagttatagcaaa
tacctgaaacttcgctcactggtggtatttggtggcgttagcattaatccgcagatgatg
aaattgcgtggtggcgtcgatattttagtcgcgacacctggccgtttactggatctggaa
catcaaaacgcggttgatttgtccaaaattgaaattttagtattggacgaagctgaccgt
atgctggatatgggctttattcacgatatccgccgtgtattagccaaattaccggctaaa
cgtcagaatttgctgttctctgccaccttctctgatgagattaaagggctggccagcaaa
ttgttgcacaacccagcctctgttgaagtggctcgccgtaatacggcgtcagagcagatc
gcccaaagcgttcactttgtcgataaaaaccgtaagcgtgagctgttgtctcagatgatt
ggcgaaggtaactggcagcaagtgctggtgtttaaccgcactaagcacggcgcgaaccat
ttagctgaacagttaaataaagacggcattactgcggcggcaatccacggtaataaaagt
cagggcgcacgtactcgtgcactggccgattttaaagacggtaaaatccgtgtgttggtc
gcgacggatatcgctgcccgtggtctggatatcgaccagttacctcacgtggttaactat
gaattgccaaacgttccagaagattacgttcaccgtattggccgtactggccgcgcggaa
cggaccggggaagcgatttcactggtttgtgtcgatgaacataaactgctgcgtgatatt
gaacgtttattaaaacgtgaaattccacgtatcgcacttgatggctatgagccggatcca
agcattaaagctgatccaattcaaaatggccgtcagggccgtggtgcacaacgtccagga
atgggccgtggcagcagcgcgggtcgtccgcagaatgggggcggtgcagcaggtcgcggt
gatagccgcaacagccgtccacgcagccaggctgatggtcaacgccgtccggcaggccca
tcgtctcgcggtcgtagccgtaatccaggcgaataa
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