Yersinia pestis Nepal516 (biovar Antiqua): YPN_3507
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Entry
YPN_3507 CDS
T00370
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
ypn
Yersinia pestis Nepal516 (biovar Antiqua)
Brite
KEGG Orthology (KO) [BR:
ypn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypn03019
]
YPN_3507
Messenger RNA biogenesis [BR:
ypn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
YPN_3507
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
RH1
Claudin_2
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
ABG19834
UniProt:
A0A0H2YLC1
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All DBs
Position
complement(4003151..4005067)
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AA seq
638 aa
AA seq
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MRFTTKLSAFMTLLVVLAMCLVLLGSTISFFYLCQKKMEQRLQSIVTAYDQSLLLQPINK
KREWLPLMMQTLGVVDVSVKNSTSTLYQLHIPAVYTPWNSHSRYRQMVLPLLHQPGTEMH
FNYIDPLGSYARSIYAAAILSLVVVVIALTLLLSFRWLRDQTVGQEKLERRARRILNGER
EHAVRSEDYEWPPCASRAIDHLLSELMEVRAERNRVDTLIRTFAAQDAQTGLSNRQFFDN
QLTTQLEETGAHGVVMMVQLPDFEALNETHDQQQVQELMSSLVNLLSTFVARYPSALLAR
YLNSDIAILLPHKTLKDADVMAAQLVNAVRTLPEPHIIDRESLLHIGIVAYRSGESVEQI
MDNAGQATKSAALYGGNGWYVFDTQVPERGRGSVKWRTLLEQTLASGGPRLYQKPVITVD
GKISHREIISRIYDGEQELLAAEFMPLVQLLGLGERYDRQKIDKIIPLLSLWPDETLAFS
ISVDSLLHRPFQRWLRDTLLQCKKSDRMRIIFELAEADVCQHIEEIRQMVRLLRGVGCKV
MASQAGLTVVSTSYIKSLQVEMIKLHPGVVRSINFRYENQLFVESLTGACAGTQTKVFAA
EVRTREEWQTLQEKGVYGGQGNFFAPPTPLNSGKKKYS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccaccaaactttctgcgtttatgacgctgctggtcgtattggctatgtgt
ttagtcttattgggcagcacgatcagcttcttctatttgtgccagaagaaaatggaacaa
cggctccaaagtattgtgaccgcttacgatcagtcactgctgctgcaacccatcaataaa
aaacgtgaatggctgccactgatgatgcagacccttggtgtggtcgatgtcagtgtcaaa
aatagcaccagtaccctctatcaactccacattcctgcagtttatacgccttggaacagc
cacagtcgctaccgtcagatggtattgcctctgttgcatcagccagggacggagatgcat
ttcaactatattgacccgttgggtagctatgcccgttctatttatgccgcggccatttta
tcactggtggtggtggtcattgcgttaacgttgttgttgagtttccgctggctacgtgac
cagaccgtggggcaggaaaaacttgaacggcgagcaaggcgcattctcaatggtgaacgt
gaacatgcggtgcgcagcgaggattacgaatggccaccttgtgccagcagggctattgac
catttattatctgagttgatggaggtgcgggcagaacgcaatcgggtagatacgttaatc
cgcacgtttgcggctcaagatgctcagactggcctcagtaaccgtcagttttttgataac
caactgaccacacaacttgaagagaccggtgcgcacggtgtggtcatgatggtgcaactg
cccgattttgaagccttaaatgaaacgcatgatcagcagcaagtacaggaattgatgagt
tcactggttaacctgctgtcaacttttgtggcacgctacccctcagcactcttggcccgc
taccttaatagtgacatcgcgatattactgccccacaaaaccctgaaagatgccgatgtg
atggccgcacagttggtgaatgcggtgagaaccttaccggagcctcatattattgatcgc
gaatcactgttgcatattggcatcgtggcttaccggagtggtgagtcagtcgaacaaatt
atggacaatgccgggcaggcgaccaaaagtgcggcgctgtatggtggcaacggttggtat
gtgttcgacactcaggtaccggagcgcggacgtggcagtgttaaatggcgtacattactg
gaacagactctggcgagcggaggcccaaggctttatcaaaaacccgttattactgttgat
ggcaaaataagccatcgtgaaataattagccgcatatatgatggtgagcaggagctactg
gcggccgagtttatgcccttggtacaattgctcggattgggtgaacgttatgatcggcaa
aagattgataagataattcctttattatctttatggccggatgaaacgctggcattttct
atcagcgttgattcattattacatcgtcctttccagcgctggttgcgtgacacgctatta
cagtgcaaaaaatctgaccgaatgcgaattatctttgaacttgcagaggcagatgtgtgt
caacatatcgaagaaatccgccaaatggtccgtttattgcgtggcgtaggctgcaaagtg
atggcatcacaggctggattgacggttgtcagcacctcatatattaagtctttgcaggtt
gaaatgataaagcttcatcccggtgtggtaagaagcattaattttcgctatgaaaaccag
ttatttgtagaaagtctgaccggtgcctgtgcagggacgcagacgaaagtttttgcggca
gaagtgcgtacccgtgaagaatggcaaacgctgcaagagaaaggcgtttacggcggacag
ggcaatttctttgctccaccgaccccattaaactccggaaagaaaaaatattcgtaa
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