Yersinia pseudotuberculosis IP 32953 (serotype 1): BZ17_3919
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Entry
BZ17_3919 CDS
T03832
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypo
Yersinia pseudotuberculosis IP 32953 (serotype 1)
Pathway
ypo03030
DNA replication
ypo03410
Base excision repair
ypo03420
Nucleotide excision repair
ypo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BZ17_3919 (ligA)
03410 Base excision repair
BZ17_3919 (ligA)
03420 Nucleotide excision repair
BZ17_3919 (ligA)
03430 Mismatch repair
BZ17_3919 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypo03032
]
BZ17_3919 (ligA)
03400 DNA repair and recombination proteins [BR:
ypo03400
]
BZ17_3919 (ligA)
Enzymes [BR:
ypo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BZ17_3919 (ligA)
DNA replication proteins [BR:
ypo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BZ17_3919 (ligA)
DNA repair and recombination proteins [BR:
ypo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BZ17_3919 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BZ17_3919 (ligA)
MMR (mismatch excision repair)
DNA ligase
BZ17_3919 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BZ17_3919 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
DNA_pol_lambd_f
RNA_ligase
DUF4796_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AJJ53481
UniProt:
Q668M6
LinkDB
All DBs
Position
4435575..4437587
Genome browser
AA seq
670 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAG
FEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHI
QCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLVLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAG
KLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRA
ADIETLKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVID
EAEMIRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaattaatcaactaagaacttcattgcgccatcatgaacat
caataccatgtgctggatgcccccgaaatccctgatgctgaatacgaccgtatgatgcaa
caactgcgtgatttagaagcacaacatcctgaactggtgactaatgactcaccgacgcaa
cgggttggtgccgcgcctcttgatgcctttgaacaggtgaagcacgaagtaccgatgctg
tctcttgataatgtgtttgatgaagaaagttatctggccttcgataaacgggtacatgac
cggcttaaaacggcagaaccactgacattttgttgtgaactgaagctagatggtctggcg
gtcagtttattgtatgaaaatggtgaattggtgagagccgcgacacgtggtgatggcact
acgggagaaaatattaccgctaatgtgcgtactattcgtgccattccactgcgcctacat
ggggataatgtcccgcggcgcgtagaagtccgtggcgaggtttttatgccacaagccggt
tttgaacagcttaacgaagaggctcgtcgcaaaggagggaaggtctttgccaacccacgg
aatgcggcggcgggatcgttacgccaactcgatccccgtattacagccaaacggccactc
accttcttctgctatggtgtcggtctgctggatggcggcgagctaccccgtagccatatt
cagtgtctgatgcaatttaaggcatgggggttacccgtgagtgagcgggtgaaactctgc
actggcagtgatcaggttattgctttttatcgtcaaatagagcaagaccgcgcaggcttg
ggctttgatattgatggtgtggtgatcaaagttgatgatcttgttttgcaggagcaattg
gggtttgttgcgcgagccccacgctgggcaacggcatttaaattcccggcgcaggaacag
atcacacaggtccgtgaagtggaatttcaagtgggtcgtaccggtgccattactcccgta
gcccgtctggagccggttcaggtggctggcgtgattgtcagtaatgcgacattgcacaat
gccgatgaaatcgaacgccttggtttgcgtattggcgatacggtcattgtgcgccgtgcg
ggtgatgtgatcccacaagttgttggtgtggtcatggaacaacgccctgatgatacgaag
gagatcactttcccaagccaatgcccagtgtgtggctccgatattgaacgggtggaaggg
gaggctgttgcccgctgcactggcggcttgttctgtgctgcacagcgtaaagaggcactt
aaacattttgtctcccggcgagcactggatgtagacggtatgggcgataaaattatcgaa
caactggtcgagaaacagtatgttgaaaatccagctgatttattccaactgaccgcaggt
aagttgacggggttagatcggatggggccaaagtctgcgcaaaatctgattgcggcgctg
gagaaggccaaacagaccacctttgcacgcttcttgtatgccttggggatccgcgaagtg
ggcgaagcgacggccgcaaatttagccgctcacttccgcactctggataatctgcgtgca
gcagatattgagacgttaaaaagtgtgccggatgtcggcgaggtggtggctaaacatgtg
atgaacttcctcagtgaggaacataatcagaaagtcatcgaagaactggagaaagtggtc
agttggcctgagccgcagcaaattgtagtcgaggagatcgatagccccttcgctggaaaa
acggtggtcctgacggggtcattgacgatcctttcacgggatgaagcgaaagaccgcctg
acagcattaggcgcaaaagtgagtggcagtgtctctaaaaaaacgcatctggtgatcgct
ggcgaggcggctggttctaaactggcgaaagcgcaggaactcggaattaaagttattgat
gaagctgaaatgatccgtttgctgggtgaataa
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integrated database retrieval system
