Yersinia pestis D182038: YPD8_2613
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Entry
YPD8_2613 CDS
T01833
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypx
Yersinia pestis D182038
Pathway
ypx03030
DNA replication
ypx03410
Base excision repair
ypx03420
Nucleotide excision repair
ypx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPD8_2613
03410 Base excision repair
YPD8_2613
03420 Nucleotide excision repair
YPD8_2613
03430 Mismatch repair
YPD8_2613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypx03032
]
YPD8_2613
03400 DNA repair and recombination proteins [BR:
ypx03400
]
YPD8_2613
Enzymes [BR:
ypx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YPD8_2613
DNA replication proteins [BR:
ypx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YPD8_2613
DNA repair and recombination proteins [BR:
ypx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YPD8_2613
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPD8_2613
MMR (mismatch excision repair)
DNA ligase
YPD8_2613
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YPD8_2613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DNA_pol_lambd_f
RNA_ligase
DUF4796_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACY63286
LinkDB
All DBs
Position
complement(3317041..3319011)
Genome browser
AA seq
656 aa
AA seq
DB search
MRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVGAAPLDAFEQVK
HEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYENGELVRAA
TRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNEEARRKGGK
VFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQFKAWGLPVS
ERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARAPRWATAFK
FPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERLGLRIGDT
VIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEGEAVARCTGGLFCAA
QRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAGKLTGLDRMGPKSAQ
NLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRAADIETLKSVPDVGE
VVAKHVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRD
EAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
ttgcgccatcatgaacatcaataccatgtgctggatgcccccgaaatccctgatgctgaa
tacgaccgtatgatgcaacaactgcgtgatttagaagcacaacatcctgaactggtgact
aatgactcaccgacgcaacgggttggtgccgcgcctcttgatgcctttgaacaggtgaag
cacgaagtaccgatgctgtctcttgataatgtgtttgatgaagaaagttatctggccttc
gataaacgggtacatgaccggcttaaaacggcagaaccactgacattttgttgtgaactg
aagctagatggtctggcggtcagtttattgtatgaaaatggtgaattggtgagagccgcg
acacgtggtgatggcactacgggagaaaatattaccgctaatgtgcgtactattcgtgcc
attccactgcgcctacatggggataatgtcccgcggcgcgtagaagtccgtggcgaggtt
tttatgccacaagccggttttgaacagcttaacgaagaggctcgtcgcaaaggagggaag
gtctttgccaacccacggaatgcggcggcgggatcgttacgccaacttgatccccgtatt
acagccaaacggccactcaccttcttctgctatggtgtcggtctgctggatggcggcgag
ctaccccgtagccatattcagtgtctgatgcaatttaaggcatgggggttacccgtgagt
gagcgggtgaaactctgcactggcagtgatcaggttattgctttttatcgtcaaatagag
caagaccgcgcaggcttgggctttgatattgatggtgtggtgatcaaagttgatgatctt
gctttgcaggagcaattggggtttgttgcgcgtgcccctcgctgggcgacggcatttaaa
ttcccggcgcaggaacagatcacacaggtccgtgaagtggaatttcaagtgggtcgtacc
ggtgccattactcccgtagcccgtctggagccggttcaggtggctggcgtgattgtcagt
aatgcgacattgcacaatgccgatgaaatcgaacgccttggtttgcgtattggcgatacg
gtcattgtgcgccgtgcgggtgatgtgatcccacaagttgttggtgtggtcatggaacaa
cgccctgatgatacgaaggagatcactttcccaagccaatgcccagtgtgtggctccgat
attgaacgggtggaaggggaggctgttgcccgctgcactggcggcttgttctgtgctgca
cagcgtaaagaggcacttaaacattttgtctcccggcgagcactggatgtagacggtatg
ggcgataaaattatcgaacaactggtcgagaaacagtatgttgaaaatccagctgattta
ttccaactgaccgcaggtaagttgacggggttagatcggatggggccaaagtctgcgcaa
aatctgattgcggcgctggagaaggccaaacagaccacctttgcacgcttcttgtatgcc
ttggggatccgcgaagtgggcgaagcgacggccgcaaatttagccgctcacttccgcact
ctggataatctgcgtgcagcagatattgagacgttaaaaagtgtgccggatgtcggcgag
gtggtggctaaacatgtgatgaacttcctcagtgaggaacataatcagaaagtcatcgaa
gaactggagaaagtggtcagttggcctgagccgcagcaaattgtagtcgaggagagcgat
agccccttcgctggaaaaacggtggtcctgacggggtcattgacgatcctttcacgggat
gaagcgaaagaccgcctgacagcattaggcgcaaaagtgagtggcagtgtctctaaaaaa
acgcatctggtgatcgctggcgaggcggctggttctaaactggcgaaagcgcaggaactc
ggaattaaagttattgatgaagctgaaatgatccgtttgctgggtgaataa
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integrated database retrieval system
