Yokenella regensburgei: HEC60_11405
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Entry
HEC60_11405 CDS
T06519
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yre
Yokenella regensburgei
Pathway
yre03030
DNA replication
yre03410
Base excision repair
yre03420
Nucleotide excision repair
yre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEC60_11405 (ligA)
03410 Base excision repair
HEC60_11405 (ligA)
03420 Nucleotide excision repair
HEC60_11405 (ligA)
03430 Mismatch repair
HEC60_11405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yre03032
]
HEC60_11405 (ligA)
03400 DNA repair and recombination proteins [BR:
yre03400
]
HEC60_11405 (ligA)
Enzymes [BR:
yre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HEC60_11405 (ligA)
DNA replication proteins [BR:
yre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HEC60_11405 (ligA)
DNA repair and recombination proteins [BR:
yre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HEC60_11405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HEC60_11405 (ligA)
MMR (mismatch excision repair)
DNA ligase
HEC60_11405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HEC60_11405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_ligase
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QIU89866
LinkDB
All DBs
Position
complement(2345570..2347585)
Genome browser
AA seq
671 aa
AA seq
DB search
MHSIEQQLTELRTTLRHHEHLYHVMDAPEIPDAEYDRLMRELRELEAQHPELITRDSPTQ
RVGAEPLAAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNSDKLTWCCELKLDGLA
VSILYENGELVQAATRGDGTTGEDITSNVRTIRAIPLKLRGANIPARLEVRGEVFLPQAG
FEKINDDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKEWGLPVSDRVTLCESPEEVLAFYHKVEEDRPHLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETQEIVFPTHCPVCHSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNVVNALEKAKQTTFARFLYGLGIREVGEATAAGLAGYFGSLEALEA
ASIEELQKVPDVGIVVATHVFNFFAEASNREVIQQLLKEGVSWPAPVVVNAEEIDSPFAG
KTVVLTGSLSLMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMIRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcactctatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaacac
ctttaccacgtgatggacgcaccggagatcccggatgcggagtacgatcgtctgatgcgc
gaactgcgtgagctggaagcacagcatcctgaacttatcacccgtgattcgcctactcaa
cgcgttggcgctgagccactggcggcgttcagccaggtgcgccacgaagtgccgatgctg
tcgctcgacaacgtgtttgatgaagagagctttctggcttttaacaaacgcgttcaggat
cgactcaaaaacagcgacaagctgacctggtgctgcgagctgaagctcgatggtctggcg
gtgagcattctttacgagaacggcgaactggtacaggccgctacccgtggcgacggcaca
acgggggaagacatcaccagcaacgtgcggaccattcgcgctatcccgctgaagctgcgc
ggagctaatatcccggcccgtcttgaggtgcgcggcgaagtgttcctgccacaggccggt
ttcgaaaaaattaacgacgatgcgcgacgcaccggtggcaaggtctttgctaacccgcgt
aacgcggcggccggttcgctgcgccagctcgacccgcgcattaccgcgaaacgtccgctg
accttcttctgctacggcgtcggggtgcttgaaggtggtgaactgccggacacgcatctt
ggccgcctgctgcagtttaaagagtgggggctgccggtcagcgaccgggtgacgctgtgt
gaatcaccagaagaagtgctggcgttttatcacaaggttgaagaggaccgtccgcatctc
ggcttcgacatcgatggcgtagtgattaaagtcaactcgttggcgctgcaggaacagctg
ggctttgtcgctcgggcaccgcgttgggcggtcgcgtttaagttcccggcgcaggagcag
atgaccttcgtgcgcgacgtcgagttccaggtcggtcgtaccggcgcgattaccccggtg
gcccgtcttgagccggttcaggtggcgggtgtactggtcagtaacgccacgctgcataac
gccgatgagattgagcgtcttggcctgcgtattggcgataaggtggtgatccgccgcgct
ggggacgttatcccgcaggtggtcaacgtggtgctctccgagcgcccggaagagacccag
gaaatcgtgtttcccacgcactgtccggtatgtcactcagacgtcgaacgcgtagaaggc
gaggcggtaacccgctgcaccggagggcttatctgcggtgcacagcgtaaagaggcgctc
aagcatttcgtttcccgccgcgcgatggacgttgacggtatgggtgacaagattatcgac
cagctggtggaaaaagagtacgtccataccccggccgatctctttaccctgacggccggt
aagctgacgggccttgatcggatggggccgaagtcggcgcagaacgtggtcaatgcgctg
gaaaaagccaaacaaacgacgtttgcccgtttcctctatggcctgggtatccgtgaagtc
ggagaggctaccgccgctggcctggcgggttattttggctcactggaggcgctggaagcg
gcgtccattgaagaattgcagaaggtaccggacgtcggcatcgtcgttgcgactcacgtt
tttaacttcttcgctgaagcgagtaaccgtgaggttatccagcaactgctgaaagagggc
gttagctggcctgcccccgtggtggttaacgccgaagagatagatagcccgtttgccggg
aaaacggtagttctgaccggtagcctgagcctgatgtcacgtgacgatgccaaagcgcgg
ttggtggcgctgggagcaaaagtcgccggtagcgtgtcgaaaaaaaccgacctggtgatc
gccggtgaagcggcgggctctaagcttgcgaaagcacaggagctgggcattgcggtgatt
gatgaagccgaaatgatccgcctgctgggagagtaa
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integrated database retrieval system
