Yersinia ruckeri YRB: BD65_942
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Entry
BD65_942 CDS
T03611
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03030
DNA replication
yru03410
Base excision repair
yru03420
Nucleotide excision repair
yru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BD65_942 (ligA)
03410 Base excision repair
BD65_942 (ligA)
03420 Nucleotide excision repair
BD65_942 (ligA)
03430 Mismatch repair
BD65_942 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yru03032
]
BD65_942 (ligA)
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_942 (ligA)
Enzymes [BR:
yru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BD65_942 (ligA)
DNA replication proteins [BR:
yru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BD65_942 (ligA)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BD65_942 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BD65_942 (ligA)
MMR (mismatch excision repair)
DNA ligase
BD65_942 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BD65_942 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AJI94156
LinkDB
All DBs
Position
complement(1019421..1021445)
Genome browser
AA seq
674 aa
AA seq
DB search
MESIIQQINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITADSPTQ
RVGAAPLDAFEPVRHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLA
VSLLYENGELMRAATRGDGTTGENITANVRTIHAIPLRLQGDKIPRRVEVRGEVFMPQAG
FEQLNDDARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGELPSSHF
ERLQQFKAWGLPVSERVQRCTGVDQVIAFYHQVEQDRAHLGFDIDGVVIKVDALDLQEQL
GFVARAPRWATAFKFPAQEQMTQVREVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEIERLGLRIGDTVMVRRAGDVIPQIVGVVIDERPAEAREIIFPEHCPVCGSDIERIEG
EAVARCSGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVHNPADIFNLRAE
ILTGLDRMGPKSAQNLVAALEKAKQTTFARFLYALGIREVGETTAANLAAHFRTLENLRA
ADVEALKAVPDVGEVVAKHVLNFLSEEHNQQVIQQLEQVISWPEPQLIIATEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIQVID
EAEMIRLLGESESI
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaataaatcaactacgagcctcactgcgccatcacgagcat
caatatcacgtattggatgcaccagaaattcccgatgcagaatatgatcgtttgatgggc
gaattacgcgaactggaagcgcaacaccctgagttgattaccgcagattctccgactcaa
cgggtgggtgcggcacctttggatgctttcgaaccggtgcgtcatgaagttccgatgcta
tcgctggataacgtatttgatgaagaaagctatctggctttcgataagcgggttcatgac
aggttgaaaactgccgaaccgctgactttttgctgtgagcttaaattagatggtttggcc
gttagtttgctatatgaaaatggtgagttgatgcgtgcagcgactcgtggtgatggtacc
actggcgagaatatcacggctaacgttcgtactattcacgctattcccctgcgtttgcag
ggtgacaagattccgcgtcgggtggaagtgcgtggtgaagttttcatgccgcaggccggt
tttgagcaactcaatgacgatgcacgacgtaaaggcggcaaaatatttgctaacccgcgt
aatgcagcggcagggtcgttacgtcagcttgatccgcggattactgccaaacggcctttg
acattcttctgctatggcgttggtttggtggatggcggtgaattacccagtagtcatttt
gaacgtttacaacagtttaaagcctggggcttaccggttagcgaacgtgttcaacgttgt
actggcgtggatcaggttatcgctttttatcatcaggttgaacaagatcgcgctcatctc
ggttttgatatcgatggcgtggtcatcaaggttgatgcgctggatttgcaggaacaattg
gggtttgttgccagagcgccacgttgggcgacagcgttcaagttcccggcgcaagaacag
atgactcaggtgcgagaagttgagtttcaggttggtcgtactggtgcgattacaccggta
gcacgcttggaaccagtgcaagtagccggcgtgatggtcagtaatgcgaccttgcataat
gccgatgaaatagaacgtcttggtctgcggattggtgacacggtgatggtgcggcgtgcc
ggtgatgttatcccgcagattgttggcgtagtgatcgatgaacgtcctgcagaagcgcgg
gaaatcatattccccgaacattgtccggtttgtggttctgatattgaacggattgaaggg
gaggcggtggctcgttgcagcggcggcttgttctgcgcagcacagcggaaagaagcgttg
aagcattttgtttctcgtcgtgcgctggatgttgatggcatgggcgataaaatcatcgaa
cagttagtggaaaaagagtatgtccacaatccagccgatatctttaatctccgcgctgaa
atactgaccggattggatcgcatggggccgaaatcagcacaaaatctggtggctgcgttg
gaaaaagccaaacaaacgacctttgcccgtttcctgtatgccctgggtatccgtgaagtg
ggcgagactaccgcagccaatctggccgcacatttccgcactctggagaatctgcgtgca
gccgatgtggaagcactgaaagcggtgccggatgtgggcgaagtggtggcaaaacatgtg
cttaatttcctgtcagaagaacataatcagcaggtgattcaacagcttgaacaagtgatt
agctggccggaaccacagttgattatcgccacagagatcgacagcccgtttgctggaaaa
accgtggtactcaccggttcgttaaccattctgtcgcgggatgaagccaaagatcgttta
accgcgttgggcgcgaaagtcagcggtagcgtatcgaaaaagaccgatctggtgattgcc
ggtgaagctgccggttcgaaactggccaaagcacaagagttaggtattcaggttatcgac
gaagctgaaatgattcgcttattgggcgaatcagaatcaatctaa
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