Yersinia similis: BF17_08055
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Entry
BF17_08055 CDS
T03057
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ysi
Yersinia similis
Pathway
ysi03030
DNA replication
ysi03410
Base excision repair
ysi03420
Nucleotide excision repair
ysi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BF17_08055 (ligB)
03410 Base excision repair
BF17_08055 (ligB)
03420 Nucleotide excision repair
BF17_08055 (ligB)
03430 Mismatch repair
BF17_08055 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ysi03032
]
BF17_08055 (ligB)
03400 DNA repair and recombination proteins [BR:
ysi03400
]
BF17_08055 (ligB)
Enzymes [BR:
ysi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BF17_08055 (ligB)
DNA replication proteins [BR:
ysi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BF17_08055 (ligB)
DNA repair and recombination proteins [BR:
ysi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BF17_08055 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BF17_08055 (ligB)
MMR (mismatch excision repair)
DNA ligase
BF17_08055 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BF17_08055 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
DUF3701
HHH_5
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHK19271
UniProt:
A0A0T9P9K6
LinkDB
All DBs
Position
1674776..1676479
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AA seq
567 aa
AA seq
DB search
MNILNLKIIIILLISNIIVMGGAWATSTCPDWPATRIAVEINALEQQLDKWSVAYHQQGH
SLVTDDIYDQLQDKLRVWQSCRGLPDKKESQPIPGKGQFLHPVAHTGLKKLKDETALTGW
MAGRQNLWVQPKVDGVAVTLVYHEGRLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANAP
ALLTLQGELFLLMDGHQQAKSGGMNARSTVAGALMRKSPSPLLAQIGVFIWAWPDGPKTM
KEKVTLLQVMGFPFTAKYSEPVMSHLDVVQWRQFWFQAPLPFVTDGVVVRQEEEPAGRYW
QATPGQWSMAWKYPPLQHIAEVKDIHFTIGRTGKGTVILEVLPIKIDDKWIRRVNIGSVT
RWKEWDITPGDHITLALAGHGIPRLDNVVWRVHQRNTITAPDWDKFHQLSCFQRLPHGCG
PQFLSRLIWLSGPGGLDIDGIGGGFWQELMHHGLINDLAGWLLLTPEQIAGIPGIGNARA
EKIYQQFQQAKQQPFSRWLLALGFPQVVSVDSQWQAVLRRSLSDWATMAGVGQVRAKQIK
HFLDHPDVQALADFLSTQKIVGFEPTE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactgaatctaaagataataataatcctattaatatctaacataatagtgatg
ggaggcgcttgggctacatcaacatgccctgattggcctgcaaccagaatagcggttgag
attaacgcgttggagcaacagttggataagtggtcggtcgcttaccaccagcaaggtcat
agcctggttacggatgatatttatgatcaattacaggacaaattacgtgtgtggcaatcc
tgtagggggttacctgataagaaggaaagccagccgatccctggcaaagggcaatttctt
cacccagttgcccataccgggttaaaaaagctcaaagatgaaaccgccctcacggggtgg
atggcggggaggcaaaatctctgggtacaacccaaggtagatggtgtggcagtgacactg
gtttatcatgaggggaggctagtgcaacttctcagtcgaggaaatggagtaaaaggtcaa
aactggacagaaaaagcgccatttatttctgctattcctcagtatattgcgaatgcacct
gcactattaacgttgcaaggggagttgttcctactgatggatgggcaccaacaagcaaaa
tcgggtgggatgaatgccagatcgactgttgcaggtgcactgatgcgtaagtctccgtcc
ccgctattagctcaaattggggtctttatttgggcatggcctgatggcccaaaaaccatg
aaggagaaggtaacactattgcaggtaatgggttttccttttacagctaaatacagcgaa
cccgtaatgtcgcatcttgatgtcgtgcaatggcgtcagttctggtttcaagcgccactg
ccgtttgtcaccgatggtgttgtggtcagacaagaggaggagccagccggtcgttattgg
caggcaacaccaggacagtggtctatggcgtggaagtatccgcctttgcaacacattgcc
gaggtaaaagatattcactttaccatcggccgaacgggtaaaggcacggtgatattagag
gttttaccgataaaaattgatgataaatggattcgtcgagtgaatatcggctcggtaacc
cgttggaaagaatgggatatcactccaggtgatcacattacactggcactcgccgggcat
ggcatccctcggctagataacgttgtctggcgagtacaccaacggaatactattacggca
cccgattgggataaattccatcagctaagctgctttcaacgtctaccacatggctgtgga
cctcagtttttatcccgcttgatatggcttagtggtccaggggggttagatattgacggc
atcggtggcggcttttggcaagagcttatgcatcatgggttaattaatgacttggctgga
tggttattactaacaccagagcaaattgcaggtatccctggcatcggaaatgcgcgggct
gaaaaaatttatcaacagtttcaacaggcaaagcaacaacctttttctcgttggttgctg
gcattggggttcccgcaggttgtttccgttgactcacagtggcaggctgtgttgcgccgg
agtctatctgactgggccacaatggcgggggttggacaagttcgggcaaaacaaatcaag
cattttttggatcaccccgacgtacaagcactagctgatttcttatctactcagaagatt
gtcgggttcgagcccacagagtaa
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