Paradevosia tibetensis: FNA67_14880
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Entry
FNA67_14880 CDS
T06140
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yti
Paradevosia tibetensis
Pathway
yti03030
DNA replication
yti03410
Base excision repair
yti03420
Nucleotide excision repair
yti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FNA67_14880 (ligA)
03410 Base excision repair
FNA67_14880 (ligA)
03420 Nucleotide excision repair
FNA67_14880 (ligA)
03430 Mismatch repair
FNA67_14880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yti03032
]
FNA67_14880 (ligA)
03400 DNA repair and recombination proteins [BR:
yti03400
]
FNA67_14880 (ligA)
Enzymes [BR:
yti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FNA67_14880 (ligA)
DNA replication proteins [BR:
yti03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FNA67_14880 (ligA)
DNA repair and recombination proteins [BR:
yti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FNA67_14880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FNA67_14880 (ligA)
MMR (mismatch excision repair)
DNA ligase
FNA67_14880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FNA67_14880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
QEE22804
UniProt:
A0A5B9DXH6
LinkDB
All DBs
Position
complement(3035666..3037873)
Genome browser
AA seq
735 aa
AA seq
DB search
MEFEDEVENLSEAAAKQELDKLHEAILRADIAYHQNDAPEITDAEYDAMKVRYGEIETAF
PQLRRPDSLTGKVGAPAAEGFAKVRHAVPMLSLAKAYTDQDVIDFIERGHRFFERDKDLV
LEFVTEPKIDGLSASLRYENGVFVKGATRGDGTVGEDITANLRTIADIPEKLEGSDWPQV
IEVRGEVYMTYADFEALKARSAAEGGQDYVNPRNTAAGSLRQKDPAITAQRNLRFFAYAW
GEASSMPADTQWGMIQAIKSWGFKVNELTERTASEEEMLRQYRVIEAQRSSLGYDIDGVV
YKLDRLDLRERWGYVTGEPRWAIAHKFPAEQATTVVKRIDIQVGRTGTLAPVARLEPVTV
GGVVVENVTLHNEDYIKGFDSAGAPIRDGIDIRIGDTVVIQRAGDVIPQIVKVVIEKRPA
DAVPYEFPHTCPVCGSPAVREVNEKTGKEDSRRRCTGELICPAQAIEKLRHFVSRGAMDI
EGLGAENIDLFFHAGLVKTAADIFTLRERRAEVQKALAERREEQARQREAATGKVRKNVR
SVEDRNYEGLEKLFAAIDARREPELDRFIFALGIRHIGSTTAAILARTFSTIEEVIRIGK
ETAAHADDPHAVFPSIDGIGDTVIGALISFFGNEQNDEVIDRLLEEVRPQPYVVTVSAES
QVAGKTVVFTGTLEKMSRSEAKAMAERHGAKVAGSVSSATDILVAGPGAGSKLKKAEELG
IRVVDEDGWFDLIAK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atcgagttcgaggacgaggtcgagaacctttccgaagcggcggccaagcaggagctcgac
aagctccacgaagcgattctgcgcgccgatatcgcctatcaccagaacgacgcgcccgag
atcacggacgccgaatacgatgcgatgaaggtccgctacggcgagatcgagacggcgttt
ccgcagttgcgccgcccggacagcctcaccggcaaggtgggtgcgccggcggcggaaggc
ttcgccaaggtgcgccacgccgtgcccatgctcagcctcgccaaggcctacacggatcag
gacgtcatcgacttcatcgaacgtggccatcggttcttcgagcgggacaaggacctggtg
ctcgaattcgtcaccgaacccaagatcgacgggctttccgcttcgctgcgctatgagaac
ggcgtcttcgtcaagggcgcgacgcgcggcgacggcacggtgggcgaggatatcaccgcc
aacctcaggactatcgccgacattcccgaaaagctcgagggcagcgactggccgcaggtc
atcgaagtgcgcggcgaggtctacatgacctatgccgatttcgaggcgctcaaggcgcgt
tcggcggccgagggcgggcaggattacgtcaacccgcgcaacacggcagccggctcgctg
cgccagaaggaccccgccatcacggcgcagcgcaacctgcgcttcttcgcctatgcgtgg
ggcgaggcctcgagcatgccggcggatacgcaatggggcatgatccaggccatcaagagc
tggggattcaaggttaacgagctgaccgagcggacggcctccgaggaggagatgctgcgc
cagtaccgggtgatcgaggcgcagcgctcctcgctcggctacgacatcgacggggtggtc
tataagctcgaccggctcgatctgcgcgagcgctggggatacgtgacgggcgagccgcgc
tgggccatcgcccacaagttcccggccgagcaggcgacgaccgtggtcaagcgcatcgac
atccaggtcgggcgcaccggcacgctggcgccggtggcgcggctcgaaccggtaacggtg
ggtggggtggtggtcgagaacgtcacgctccacaacgaggactatatcaagggtttcgac
agcgccggggcgcccattcgcgacggcatcgacattcgcatcggcgatacggtggtgatc
cagcgggccggcgacgtcatcccgcagatcgtcaaggtggtgatcgagaagcgcccggcc
gacgcggtaccctacgagttcccgcatacctgcccggtctgcggctcgccggcggtgcgc
gaggtcaacgagaagacgggcaaggaagattcgcgccggcgctgcacgggcgagctgatc
tgcccggcccaggccatcgagaagctgcgccatttcgtgtcgcgcggcgcgatggatatc
gaggggctgggggccgagaacatcgacctcttcttccatgccgggctggtcaagacggcc
gccgacatcttcacgctcagagaacgccgcgccgaagtgcagaaggcgctggccgagcgg
cgcgaggagcaggcgcgccagcgcgaggcggcaacgggcaaggtgcgcaagaacgtgcgc
agtgtcgaggatcgcaactacgaggggctcgagaagctcttcgcggcgatcgacgcgcgg
cgcgagcccgagctcgaccggttcatcttcgcgctgggtatccgccacatcggcagtacg
acggcggcaatcctggcgcgcaccttctcgaccatcgaggaggtgatccgcatcggcaag
gaaaccgccgcgcatgcggatgatccgcatgcggtgttcccgtcgatcgacgggatcggc
gatacagtcatcggggcactcatcagctttttcggcaacgagcagaatgacgaggtcatc
gaccggctgctcgaagaggtgcggccacagccttatgtcgtcaccgtttcggccgaaagc
caggtggccggcaagacggtggtgttcaccggcacgctcgagaagatgtcgcgcagcgag
gccaaggccatggccgagcggcacggcgccaaggttgccggttcggtgtcctcggccacc
gatatcctcgtggccgggcccggcgcgggctccaagctcaagaaggccgaggaactgggt
attcgggttgtcgacgaagacggttggttcgatctcatcgccaaatag
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