Zonotrichia albicollis (white-throated sparrow): 102062854
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Entry
102062854 CDS
T07911
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab04622
RIG-I-like receptor signaling pathway
zab04623
Cytosolic DNA-sensing pathway
zab05164
Influenza A
zab05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
102062854 (DDX58)
04623 Cytosolic DNA-sensing pathway
102062854 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
102062854 (DDX58)
05168 Herpes simplex virus 1 infection
102062854 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
zab04054
]
102062854 (DDX58)
Enzymes [BR:
zab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102062854 (DDX58)
Pattern recognition receptors [BR:
zab04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
102062854 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_19
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
102062854
NCBI-ProteinID:
XP_005492745
Ensembl:
ENSZALG00000003534
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MTAEEKQNLQCCRRYIERSLNPVYILSNMTEWLSDEVKERVRKEEEEKGVTAAAALFLDA
VLLLEAEGWLRGFLDALVAAGYTGLAEAIENWDFSKLEKLEQHRQLLKRIEATMLEIDPV
AIMPYINTCLIERECDEILQISENRSKAAGITKLIECLCRSDKENWPKSLQVALDSAEYY
NASELWNMREDNGKDIDGKMTDASENYFETMMTFSEEAECDNLSQNLSSVSESIYESSSV
YEPKRARSYQIELAQPAFDGKNTLICAPTGSGKTFVALMICEHHLQNVPSGRKAKVVFLA
TKVPVYEQQKNVFRQHFERSGYSVQGICGETVANISIENVIQDSDIIVLTPQILVNSMEK
GILSSLSVFTLMIFDECHNTTGNHPYNVLMTRYLDQKFDSSANQLPQIVGLTASVGVGNA
KSTNETVEHICTLFSYLDIQAISTVRKNKEDLQRFQNKPETHIRWVKMRAQNHFADIISA
LMSETEVLMRKIYSVDSISQINKNYFGTQRYEQWIVSTQKKCRLLQLEDKEKESSICRDL
FICTEHLRKFNDALIISEDARIEDALAYLNEFFTNVKNGPFTELEKQLTEKFQEKEQELN
ALSKDESNENPKLEELACILDEAYHYNPETRTILFAKTRALVAALKKWIEGNPLLSHIKP
DVLMGKGRRDQKTGMTLPMQKGVLDAFRNDKDIRLLIATSVADEGIDITECNLVVLYEYF
GNVTKMIQVRGRGRARDSKCILVTSKTEVVENEKRNSYKEEMMNAAIEKLQNWDETTFAR
KIHGLQMKEKMVRDSRKNKTKPEIVEGKKNLLCGKCKAYVCSTDDIRIIKESHHTVLGDA
FKERYTTKPHRKPLQFDGFEKKSKMHCQNTECQHDWGIIVKYKIFDNLPVIKIRSFVLED
VETGTQMDFQKWKSLNLSLKEFDEETSS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggaggagaagcagaacctgcagtgctgcaggcgctacatcgagaggagcctg
aaccccgtgtacatcctcagcaacatgacggaatggctgtccgacgaggtgaaggagaga
gtccgcaaggaggaggaggagaagggcgtgacggcggccgccgcgctgttcctggatgcc
gtgctgctgctggaggcggagggctggctccggggctttctggatgccctggttgcagca
ggttacactggactggcagaagcaattgaaaactgggacttcagcaaactggaaaaactg
gagcagcacaggcagctgttgaagcggatagaagcaacaatgctagaaattgatccagta
gcaatcatgccatacataaacacatgcctgatagagagggagtgtgatgagatcctgcag
atcagtgaaaacagaagcaaggcagccgggataacgaaactcattgaatgcctctgtcgc
tcggataaggaaaattggcccaaaagtcttcaggtggcattggatagtgctgaatattac
aatgcaagtgaactgtggaatatgagagaagataatggcaaagacattgatggtaaaatg
acagatgcctctgagaattactttgaaaccatgatgacattttctgaagaagcagaatgt
gataatctgagccaaaatctctcttcagtttcagaaagcatctatgagtcttcatctgtt
tatgaaccaaagagggctcggagctaccagattgagcttgcacagcctgcttttgatggg
aaaaacacattgatttgtgcccccacaggatctggaaaaacttttgtggcgcttatgatt
tgtgaacatcacttgcaaaacgttccctcaggacgaaaggcaaaagttgtcttccttgca
accaaagtgccagtgtatgagcaacagaaaaatgtattcaggcagcattttgaaagaagt
ggatactctgttcaaggaatttgtggtgaaacagttgcaaatatctctatagaaaatgtt
atacaggacagtgacatcattgtgttaacgccccagattcttgtgaatagcatggagaaa
gggatccttagctccctctctgtcttcactctgatgatatttgatgagtgccacaacact
acaggcaaccacccttacaatgtgttgatgaccagatacctggatcaaaaatttgactcc
tctgcaaaccagctacctcagattgtaggtttaactgcttctgttggagttggtaatgcc
aagagcactaatgaaactgtagagcacatctgtaccctcttctcctaccttgacatacag
gccatatccactgtcagaaagaacaaagaagatctgcagaggtttcaaaataagccagaa
acacatatcagatgggttaaaatgcgagctcagaatcactttgcagacattatctcagct
ctgatgtctgagacagaagtgttgatgaggaagatttactcagtggattccatctcccaa
atcaacaagaattactttggaacacagagatatgaacagtggatagtttccactcagaag
aaatgcagactattgcaactggaagacaaggagaaggagagcagtatttgtagagacctt
ttcatttgtactgaacacttgcggaaatttaacgatgctctcattatcagtgaagatgcc
cgcattgaagatgctttagcctacctaaatgaatttttcacaaatgtaaaaaacggacca
tttacagagttagagaagcagctgacggagaaatttcaagagaaagaacaagagctgaat
gccctttcaaaagatgagtcaaatgagaatccaaagttggaagagcttgcttgcatcctg
gatgaagcataccactataacccagagactcgcacaattctctttgccaagacaagagcc
ttagtagctgctttgaagaagtggatagaaggaaaccctcttcttagccacataaagcca
gatgtgttgatgggtaaaggaagaagagatcagaaaacaggtatgaccttgccaatgcag
aagggtgtactggatgcattcagaaatgacaaagacatcagactgctaattgccacatct
gttgctgacgaaggcattgatattactgagtgcaaccttgtggtgctctatgaatacttc
ggaaatgtcaccaaaatgatccaagtcagaggtcgtggaagggcaagagacagcaagtgc
atcctcgtgacaagcaagacagaagtggttgagaacgaaaaacgaaacagttacaaggaa
gaaatgatgaatgcagctattgaaaagctacagaactgggatgaaacaacatttgcaaga
aagatacatggcctgcaaatgaaggaaaagatggtacgagattccaggaagaacaaaaca
aaaccagaaatagtagaagggaaaaaaaatcttttgtgtggaaaatgcaaagcatatgtc
tgcagtacagatgacatcagaattataaaggaatctcatcatactgtcttaggtgatgca
ttcaaggagcgttatacaacaaagccccacaggaaacctcttcaatttgatggttttgag
aaaaaaagcaagatgcattgccaaaatactgagtgtcagcatgactgggggatcatagtg
aagtacaagatatttgacaatctaccagtgatcaaaatcagaagctttgtactagaggat
gttgaaacagggacacaaatggattttcagaaatggaaaagtcttaatttgtctttgaag
gagtttgatgaagaaacatccagctga
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integrated database retrieval system
