Zobellella denitrificans: AN401_03815
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Entry
AN401_03815 CDS
T05100
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
zdf
Zobellella denitrificans
Pathway
zdf03030
DNA replication
zdf03410
Base excision repair
zdf03420
Nucleotide excision repair
zdf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AN401_03815 (ligA)
03410 Base excision repair
AN401_03815 (ligA)
03420 Nucleotide excision repair
AN401_03815 (ligA)
03430 Mismatch repair
AN401_03815 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zdf03032
]
AN401_03815 (ligA)
03400 DNA repair and recombination proteins [BR:
zdf03400
]
AN401_03815 (ligA)
Enzymes [BR:
zdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AN401_03815 (ligA)
DNA replication proteins [BR:
zdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AN401_03815 (ligA)
DNA repair and recombination proteins [BR:
zdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AN401_03815 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AN401_03815 (ligA)
MMR (mismatch excision repair)
DNA ligase
AN401_03815 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AN401_03815 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
POLH-Rev1_HhH
MRB1590_C
RNA_pol_A_CTD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ATG73087
UniProt:
A0A291HLP7
LinkDB
All DBs
Position
811226..813268
Genome browser
AA seq
680 aa
AA seq
DB search
MSDVKARILALREQLDSYNYQYYVEDAPSVPDAEYDRLMRELVALEQAHPELLDPDSPSQ
KVGGAPVSAFPEVQHALPMLSLDNVFSDEELAAFEKRVMDRLDRAEPLDFCCEPKLDGLA
VSLVYEQGRLVQAATRGDGSTGEGITENVRTIRAVPLKLKGEGWPARLEVRGEVYMPRAG
FEKMNEDARAEGGKVFANPRNAAAGSLRQLDSRVTARRPLAFYCYGVGLVEGDALAERHF
DILQQLKGWGLPVCPEIKRVQGRAGCQAYHDDILARRDRLPYEIDGVVYKVDELALQQQL
GFVARAPRWATAHKFPAQEELTRLLKVEFQVGRTGAITPVAKLEPVPVAGVTVSNATLHN
ADEIARLGVMVGDTVIVRRAGDVIPQVVGVVLERRPADAQPIVFPDHCPVCDAEIERIEG
EAVARCTGGLFCAAQRKEAIRHFASRKALDIEGLGTKLVEQLVDQEQVKTPADLFHLSQE
TLAGLERMGEKSAAKLLAALDKARTTTLPRFLYALGIREVGEATALNLARHFLTLEAVMQ
AEVETLLAVPDVGEVVAKHIYYFFRQPHNQEVVRALVSPREQGGCGLHWPAIEAVPVAAQ
PLAGQTFVLTGTLNRLSRNDAKAALQALGAKVAGSVSAKTSQVVAGEAAGSKLVKAQELG
VPVMDEDGLLALLAGHGWQP
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgtcaaagcccgaatccttgccctgcgcgagcaactcgatagctacaactac
cagtattacgtggaagacgcgcccagcgtgcccgacgccgagtacgaccggctgatgcgg
gagctggtggcgctggagcaggcccaccccgagctgctggacccggactctcccagccag
aaggtgggcggggcaccggtgtccgcctttcccgaggtgcagcatgccctgcccatgctg
tccctcgacaacgtgttcagcgacgaggagctggccgctttcgaaaagcgggtgatggac
cggctggaccgggccgagccgctcgatttctgctgcgagcccaagctcgatggcctggcg
gtcagcctggtgtacgagcagggccgcctggtgcaggcggccacccggggcgatggcagc
accggcgagggcatcaccgagaacgtgcgcaccattcgtgccgtgccgctgaagctgaaa
ggggagggctggccggcccggctcgaggtgcgcggcgaggtgtacatgccccgggccggt
tttgagaaaatgaacgaagatgcccgggccgagggcggcaaggtgttcgccaacccgcgc
aatgccgccgccggcagcctgcgccagctcgactcccgcgtcaccgcccggcgaccgctg
gcgttctattgctacggggtcggcctggtggagggcgacgccctggccgagcgccacttc
gacatcctgcaacagttgaagggctggggactgccggtgtgtcccgagatcaagcgggtg
cagggccgggccggctgtcaggcctaccatgacgatatcctggcgcgacgcgaccggttg
ccctacgagatcgacggcgtggtctacaaggtggacgagctggccctgcagcagcaattg
ggcttcgtggcccgggcgccgcgctgggccaccgcccacaagtttccggcccaggaagag
ctgacccggctgctgaaggtggagttccaggtggggcgcaccggggccatcaccccggtg
gccaagctggagccggtgccggtggccggggtgacggtgtccaacgccaccctgcacaat
gccgacgaaatcgcccggctgggggtcatggtgggcgacaccgtgatcgtgcgccgggcg
ggggatgtcattccccaggtggtgggcgtggtgctggagcggcgtccggcagacgcccag
cccatcgtgttccccgatcattgcccggtctgtgacgccgagatagaacggatcgagggc
gaggcggtggcccgctgtaccggcggcctgttctgcgccgcccagcgcaaggaagccatc
cgccacttcgcctcccgcaaggccctggacatcgagggcctgggcaccaagctggtggaa
caactggtggatcaggagcaggtgaagacgccggcggatctgttccacctgagccaggag
accctggccggactggagcggatgggcgagaagtccgccgccaagctgctggccgccctg
gacaaggcgcgtaccaccacgctgccgcgctttctctatgccttggggatccgcgaagtg
ggggaggccacggcgctcaacctggcccgccacttcctgaccctggaggcggtgatgcag
gccgaggtagagaccctgctggcggtgccggacgtgggcgaggtggtggccaagcatatc
tactacttcttccgccaaccccataaccaggaggtggtgcgggcgctggtgagcccgcgg
gagcagggcggttgcggtctgcactggccggcgatcgaggccgtgccggtcgccgcccag
ccgctggcggggcagaccttcgtgcttaccggcaccctgaaccggttgtcgcgcaacgac
gccaaggcggcgctccaggccctgggcgccaaggtggccggctcggtctcggccaagacc
agccaggtggtggcgggcgaggccgccggctccaagctggtcaaggcccaggaactgggc
gtgccggtgatggatgaggacgggctgctggcgctgctggccggacacggctggcagccc
tga
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