Ziziphus jujuba (Chinese jujube): 107407504
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Entry
107407504 CDS
T04794
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107407504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107407504
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107407504
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_25
Arf
AAA_15
AAA_29
AAA
AAA_23
SMC_N
ORC-CDC6-like
nSTAND3
AAA_7
AAA_30
Zeta_toxin
TsaE
ATP-synt_ab
AAA_28
Motif
Other DBs
NCBI-GeneID:
107407504
NCBI-ProteinID:
XP_015870279
UniProt:
A0A6P3Z145
LinkDB
All DBs
Position
10:complement(join(19653271..19653501,19653635..19653712,19653795..19653947,19654266..19654361,19654763..19654882,19655100..19655233,19655774..19655942))
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AA seq
326 aa
AA seq
DB search
MGRLENSGPTIEINGLRFTYPGIDGHPPPGSKPLIEDFSLTLNAGERCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDIS
AEKMIFGVDGVDPQRRAELIKVLDINLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEEWPSHVVYVANGKLQLAMPMDR
VKEMSKLSLMRTVESWLRKERDEERKRRKERKANGLPEFEEQIEGSRVTGDPARRALNNG
WAAGRLNSTVAGEENFVLSSNRVLRG
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggttggagaattcggggccaacgattgagatcaacggtctgaggttcacgtat
ccgggaatcgacggccatcctccgccgggctctaagcctcttatcgaagacttttctctt
actctcaatgctggagaacgctgccttcttgtcggatctaatggcgctgggaaaactaca
attttgaagatactgggggggaagcacatggtggaacctcatatggttcgtgtgcttggg
agatcagcctttcatgacaccgctttgacttcttctggtgatctttgttatcttggagga
gagtggaggcgggatgttgcctttgcagggtttgaagttccaatccaaatggatatttct
gcagaaaagatgatatttggagtggacggagttgatcctcaaagaagagctgagctaatc
aaggtattggatataaatctatcatggaggctgcacaaagtatctgatggccagagaagg
cgggtgcaaatatgtatgggtctcctcaagccattcaaggttcttcttcttgatgagata
acagttgaccttgatgtgctagcaagggctgatcttttaaggtttctaagaaaggaatgt
gaggagcgaggtgccacaattatttatgccacgcatatatttgatggtctggaggaatgg
ccatcacatgttgtttatgtggctaatgggaagttgcaattggcaatgcctatggataga
gttaaggagatgagcaaactgtcactaatgagaacagttgagagttggctaaggaaagaa
cgagacgaggagaggaagagaagaaaagagagaaaggcaaatggtcttcctgaatttgaa
gaacaaattgagggaagccgcgtaactggggacccggctcgacgtgcacttaacaatggc
tgggcagcaggaaggctgaactccactgttgctggagaagagaactttgtgttgagctcc
aacagagtattgagaggatag
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